GWAS1321746_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1321746_H (forced expiratory volume QTL GWAS1321746 (human)) Homo sapiens

Symbol: GWAS1321746_H
Name: forced expiratory volume QTL GWAS1321746 (human)
RGD ID: 597225672
Trait: forced expiratory volume
Measurement Type: forced expiratory volume   (CMO:0000254)    
LOD Score: Not Available
P Value: 9.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38119,620,762 - 19,620,763RGD_MAPPER_PIPELINEGRCh38
GRCh37119,947,256 - 19,947,257RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1321746_HHumanforced expiratory volume  IAGPrs10489858405850206 GWAS_CATALOGPMID:30068317

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1321746_HHumanforced expiratory volume  IAGPrs10489858405850206 GWAS_CATALOGPMID:30068317

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1603802MICOS10mitochondrial contact site and cristae organizing system subunit 1011959697919629820Human
7243405MICOS10-NBL1MICOS10-NBL1 readthrough11959697919658452Human


Peak: (rs10489858)
Human AssemblyChrPosition (strand)Source
GRCh38119,620,762 - 19,620,763RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597225672GWAS1321746_Hforced expiratory volume QTL GWAS1321746 (human)0.000009forced expiratory volumeforced expiratory volume (CMO:0000254)11962076219620763Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1321746_H GCST006309 Post bronchodilator percent predicted FEV1 in smoking 1,086 European ancestry COPD cases, 559 European ancestry controls C NR 0.000009 5.046 rs10489858 6.381 forced expiratory volume (EFO:0004314)
 PMID:30068317
GWAS1789543_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals C 0.1068 3E-41 40.523 rs10489858 0.0134 body height (OBA:VT0001253)
 PMID:36224396
Database
Acc Id
Source(s)
GWAS Catalog GCST006309 GWAS Catalog

Note Type Note Reference