GWAS1320177_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1320177_H (BMI-adjusted waist circumference QTL GWAS1320177 (human)) Homo sapiens

Symbol: GWAS1320177_H
Name: BMI-adjusted waist circumference QTL GWAS1320177 (human)
RGD ID: 597224103
Trait: body size trait   (VT:0100005)    
LOD Score: Not Available
P Value: 4.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382046,921,850 - 46,921,851RGD_MAPPER_PIPELINEGRCh38
GRCh372045,550,489 - 45,550,490RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1320177_HHumanbody size trait  IAGPrs4809604405850206 GWAS_CATALOGPMID:34021172

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1320177_HHumanBMI-adjusted waist circumference  IAGPrs4809604405850206 GWAS_CATALOGPMID:34021172

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350703EYA2EYA transcriptional coactivator and phosphatase 2204689484347188844Human


Peak: (rs4809604)
Human AssemblyChrPosition (strand)Source
GRCh382046,921,850 - 46,921,851RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597163975GWAS1260049_Hnon-alcoholic fatty liver disease QTL GWAS1260049 (human)1e-10non-alcoholic fatty liver disease204692185046921851Human
597096535GWAS1192609_Hsex hormone-binding globulin measurement QTL GWAS1192609 (human)0.0000001sex hormone-binding globulin measurement204692185046921851Human
597030342GWAS1126416_Hwaist-hip ratio QTL GWAS1126416 (human)6e-27waist-hip ratiowaist to hip ratio (WHR) (CMO:0000020)204692185046921851Human
597315401GWAS1411475_HBMI-adjusted waist circumference QTL GWAS1411475 (human)2e-11body size trait (VT:0100005)204692185046921851Human
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
597095725GWAS1191799_Hsex hormone-binding globulin measurement QTL GWAS1191799 (human)2e-09sex hormone-binding globulin measurement204692185046921851Human
597224103GWAS1320177_HBMI-adjusted waist circumference QTL GWAS1320177 (human)4e-14body size trait (VT:0100005)204692185046921851Human
597147112GWAS1243186_Htriglyceride measurement QTL GWAS1243186 (human)1e-08body size trait (VT:0100005)blood triglyceride level (CMO:0000118)204692185046921851Human



1 to 9 of 9 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1320177_H GCST90020024 A body shape index 219,872 British ancestry women G NR 4E-14 13.398 rs4809604 0.0220011 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
GWAS1126416_H GCST008997 Waist-hip ratio 381,152 European female individuals T 0.5741 6E-27 26.222 rs4809604 0.0194 waist-hip ratio (EFO:0004343)
 PMID:30239722
GWAS1191799_H GCST90012108 Sex hormone-binding globulin levels adjusted for BMI 180,094 European ancestry men T 0.574004 2E-9 8.699 rs4809604 0.0067324 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1192609_H GCST90012109 Sex hormone-binding globulin levels 180,726 European ancestry men T 0.574004 1E-7 7 rs4809604 0.00646163 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1243186_H GCST90179149 Triglyceride levels (MTAG) 361,194 European ancestry individuals T NR 1E-8 8 rs4809604 0.01429 triglyceride measurement (EFO:0004530)
 PMID:36376304
GWAS1260049_H GCST90094908 Nonalcoholic fatty liver disease (imputed) 28,396 European ancestry cases, 108,652 European ancestry controls ? NR 1E-10 10 rs4809604 0.00596076 non-alcoholic fatty liver disease (EFO:0003095)
 PMID:35047847
None Available GCST012230 Waist-to-hip ratio adjusted for BMI 186,825 British ancestry men G NR 1E-8 8 rs4809604 0.0182359 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
None Available GCST012228 Waist-hip index 186,825 British ancestry men G NR 1E-8 8 rs4809604 0.0181538 BMI-adjusted waist-hip ratio (EFO:0007788)
 PMID:34021172
GWAS1411475_H GCST90020029 Waist circumference adjusted for body mass index 219,872 British ancestry women G NR 2E-11 10.699 rs4809604 0.0194789 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
1 to 9 of 9 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90020024 GWAS Catalog

Note Type Note Reference