GWAS1315015_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1315015_H (platelet count QTL GWAS1315015 (human)) Homo sapiens

Symbol: GWAS1315015_H
Name: platelet count QTL GWAS1315015 (human)
RGD ID: 597218941
Trait: platelet quantity   (VT:0003179)    
Measurement Type: platelet count   (CMO:0000029)    
LOD Score: Not Available
P Value: 4.0E-19
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812,271,528 - 2,271,529RGD_MAPPER_PIPELINEGRCh38
GRCh3712,202,967 - 2,202,968RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1315015_HHumanplatelet count  IAGPrs903908405850206 GWAS_CATALOGPMID:34469753

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1315015_HHumanplatelet quantity  IAGPrs903908405850206 GWAS_CATALOGPMID:34469753

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1315015_HHumanplatelet count  IAGPrs903908405850206 GWAS_CATALOGPMID:34469753

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1342955SKISKI proto-oncogene122283192310213Human
155632770LOC127266900H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:2202895-2203857122714562272418Human


Peak: (rs903908)
Human AssemblyChrPosition (strand)Source
GRCh3812,271,528 - 2,271,529RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597218941GWAS1315015_Hplatelet count QTL GWAS1315015 (human)4e-19platelet quantity (VT:0003179)platelet count (CMO:0000029)122715282271529Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597307943GWAS1404017_Hplatelet count QTL GWAS1404017 (human)6e-25platelet quantity (VT:0003179)platelet count (CMO:0000029)122715282271529Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1315015_H GCST90056183 Platelet count 235,256 European ancestry individuals T 0.49 4E-19 18.398 rs903908 N/A platelet count (EFO:0004309)
 PMID:34469753
GWAS1404017_H GCST90018969 Platelet count 350,474 European ancestry individuals, 148,623 East Asian ancestry individuals C NR 6E-25 24.222 rs903908 0.0221 platelet count (EFO:0004309)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90056183 GWAS Catalog

Note Type Note Reference