GWAS1314950_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1314950_H (bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder QTL GWAS1314950 (human)) Homo sapiens

Symbol: GWAS1314950_H
Name: bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder QTL GWAS1314950 (human)
RGD ID: 597218876
Trait: bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,907,738 - 58,907,739RGD_MAPPER_PIPELINEGRCh38
GRCh371559,199,937 - 59,199,938RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1314950_HHumanbipolar disorder  IAGPrs17302045405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:34099189
GWAS1314950_HHumanmajor depressive disorder  IAGPrs17302045405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:34099189
GWAS1314950_HHumanschizophrenia  IAGPrs17302045405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:34099189

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1314950_HHumanDepression  IAGPrs17302045405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:34099189
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1314950_HHumansex interaction measurement  IAGPrs17302045405850206 GWAS_CATALOGPMID:34099189

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1605637SLTMSAFB like transcription modulator155887905058933679Human


Peak: (rs17302045)
Human AssemblyChrPosition (strand)Source
GRCh381558,907,738 - 58,907,739RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597218876GWAS1314950_Hbipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder QTL GWAS1314950 (human)0.000004bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder155890773858907739Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
596973219GWAS1092738_Hbipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder QTL GWAS1092738 (human)0.000004bipolar disorder, schizophrenia, sex interaction measurement, major depressive disorder155890773858907739Human
406912986GWAS561962_Hunipolar depression, bipolar disorder, schizophrenia, sex interaction measurement QTL GWAS561962 (human)0.000004unipolar depression, bipolar disorder, schizophrenia, sex interaction measurement155890773858907739Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1314950_H GCST012290 Schizophrenia, bipolar disorder or recurrent major depressive disorder x sex interaction (3df) 31,567 European ancestry schizophrenia cases,19,924 European ancestry bipolar disorder cases, 5,314 European ancestry recurrent major depressive disorder cases, 78,190 European ancestry controls, 1,836 East Asian ancestry schizophrenia cases, 3,383 East Asian ancestry controls T NR 0.000004 5.398 rs17302045 N/A sex interaction measurement (EFO:0008343)
 PMID:34099189
Database
Acc Id
Source(s)
GWAS Catalog GCST012290 GWAS Catalog

Note Type Note Reference