GWAS1306007_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1306007_H (blood protein measurement QTL GWAS1306007 (human)) Homo sapiens

Symbol: GWAS1306007_H
Name: blood protein measurement QTL GWAS1306007 (human)
RGD ID: 597209933
Trait: blood protein amount   (VT:0005416)    
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 7.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381207,466,634 - 207,466,635RGD_MAPPER_PIPELINEGRCh38
GRCh371207,639,979 - 207,639,980RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1306007_HHumanblood protein measurement  IAGPrs749471642405850206 GWAS_CATALOGPMID:32929287

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1306007_HHumanblood protein amount  IAGPrs749471642405850206 GWAS_CATALOGPMID:32929287

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1306007_HHumanblood protein measurement  IAGPrs749471642405850206 GWAS_CATALOGPMID:32929287

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1320753CR2complement C3d receptor 21207454328207489892Human


Peak: (rs749471642)
Human AssemblyChrPosition (strand)Source
GRCh381207,466,634 - 207,466,635RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597209592GWAS1305666_Hblood protein measurement QTL GWAS1305666 (human)3e-17blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1207466634207466635Human
597209593GWAS1305667_Hblood protein measurement QTL GWAS1305667 (human)9e-14blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1207466634207466635Human
597209594GWAS1305668_Hblood protein measurement QTL GWAS1305668 (human)3e-15blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1207466634207466635Human
597209595GWAS1305669_Hblood protein measurement QTL GWAS1305669 (human)3e-16blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1207466634207466635Human
597209933GWAS1306007_Hblood protein measurement QTL GWAS1306007 (human)7e-17blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1207466634207466635Human
597209935GWAS1306009_Hblood protein measurement QTL GWAS1306009 (human)2e-11blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1207466634207466635Human
597209760GWAS1305834_Hblood protein measurement QTL GWAS1305834 (human)2e-16blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1207466634207466635Human
597209937GWAS1306011_Hblood protein measurement QTL GWAS1306011 (human)3e-22blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1207466634207466635Human
597209939GWAS1306013_Hblood protein measurement QTL GWAS1306013 (human)1e-17blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1207466634207466635Human
597209941GWAS1306015_Hblood protein measurement QTL GWAS1306015 (human)9e-15blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)1207466634207466635Human

1 to 10 of 11 rows


1 to 13 of 13 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1306007_H GCST90001724 CD19 on IgD+ CD24+ B cell 3,656 Sardinian (founder/genetic isolate) ancestry individuals A 0.01333 7E-17 16.155 rs749471642 0.909 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1305666_H GCST90001738 CD19 on unswitched memory B cell 3,656 Sardinian (founder/genetic isolate) ancestry individuals A 0.01333 3E-17 16.523 rs749471642 0.9171 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1305667_H GCST90001740 CD19 on switched memory B cell 3,657 Sardinian (founder/genetic isolate) ancestry individuals A 0.01332 9E-14 13.046 rs749471642 0.8106 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1305668_H GCST90001741 CD19 on IgD+ B cell 3,658 Sardinian (founder/genetic isolate) ancestry individuals A 0.01332 3E-15 14.523 rs749471642 0.854 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1305669_H GCST90001742 CD19 on transitional B cell 3,657 Sardinian (founder/genetic isolate) ancestry individuals A 0.01332 3E-16 15.523 rs749471642 0.8961 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1305834_H GCST90001723 CD19 on CD24+ CD27+ B cell 3,656 Sardinian (founder/genetic isolate) ancestry individuals A 0.01333 2E-16 15.699 rs749471642 0.89 blood protein measurement (EFO:0007937)
 PMID:32929287
None Available GCST90001725 CD19 on IgD+ CD24- B cell 3,656 Sardinian (founder/genetic isolate) ancestry individuals A 0.01333 2E-16 15.699 rs749471642 0.8885 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1306009_H GCST90001726 CD19 on IgD+ CD38- B cell 3,645 Sardinian (founder/genetic isolate) ancestry individuals A 0.01337 2E-11 10.699 rs749471642 0.7215 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1306011_H GCST90001729 CD19 on IgD+ CD38+ B cell 3,657 Sardinian (founder/genetic isolate) ancestry individuals A 0.01332 3E-22 21.523 rs749471642 1.06 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1306013_H GCST90001730 CD19 on IgD+ CD38dim B cell 3,657 Sardinian (founder/genetic isolate) ancestry individuals A 0.01332 1E-17 17 rs749471642 0.9254 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1306015_H GCST90001735 CD19 on IgD- CD38dim B cell 3,657 Sardinian (founder/genetic isolate) ancestry individuals A 0.01332 9E-15 14.046 rs749471642 0.8391 blood protein measurement (EFO:0007937)
 PMID:32929287
None Available GCST90001736 CD19 on memory B cell 3,657 Sardinian (founder/genetic isolate) ancestry individuals A 0.01332 9E-15 14.046 rs749471642 0.8429 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1306017_H GCST90001737 CD19 on naive-mature B cell 3,653 Sardinian (founder/genetic isolate) ancestry individuals A 0.01334 1E-14 14 rs749471642 0.8287 blood protein measurement (EFO:0007937)
 PMID:32929287
1 to 13 of 13 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90001724 GWAS Catalog

Note Type Note Reference