GWAS1305505_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1305505_H (blood protein measurement QTL GWAS1305505 (human)) Homo sapiens

Symbol: GWAS1305505_H
Name: blood protein measurement QTL GWAS1305505 (human)
RGD ID: 597209431
Trait: blood protein amount   (VT:0005416)    
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 2.0E-21
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381951,235,971 - 51,235,972RGD_MAPPER_PIPELINEGRCh38
GRCh371951,739,226 - 51,739,227RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1305505_HHumanblood protein measurement  IAGPrs10409348405850206 GWAS_CATALOGPMID:32929287

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1305505_HHumanblood protein amount  IAGPrs10409348405850206 GWAS_CATALOGPMID:32929287

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1305505_HHumanblood protein measurement  IAGPrs10409348405850206 GWAS_CATALOGPMID:32929287

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38667249LOC107985327uncharacterized LOC107985327195118690851271167Human
1347694CD33CD33 molecule195121107651240016Human


Peak: (rs10409348)
Human AssemblyChrPosition (strand)Source
GRCh381951,235,971 - 51,235,972RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
597209433GWAS1305507_Hblood protein measurement QTL GWAS1305507 (human)6e-15blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)195123597151235972Human
597209577GWAS1305651_Hblood protein measurement QTL GWAS1305651 (human)3e-25blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)195123597151235972Human
597208572GWAS1304646_Hblood protein measurement QTL GWAS1304646 (human)7e-18blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)195123597151235972Human
597208575GWAS1304649_Hblood protein measurement QTL GWAS1304649 (human)8e-19blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)195123597151235972Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human
597209573GWAS1305647_Hblood protein measurement QTL GWAS1305647 (human)4e-29blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)195123597151235972Human
597209734GWAS1305808_Hblood protein measurement QTL GWAS1305808 (human)6e-14blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)195123597151235972Human
597209431GWAS1305505_Hblood protein measurement QTL GWAS1305505 (human)2e-21blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)195123597151235972Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1305505_H GCST90001946 CD33 on CD14+ monocyte 1,634 Sardinian (founder/genetic isolate) ancestry individuals G 0.5785899999999999 2E-21 20.699 rs10409348 0.3384 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1304646_H GCST90001956 CD33 on CD33+ HLA DR+ 1,579 Sardinian (founder/genetic isolate) ancestry individuals G 0.5727800000000001 7E-18 17.155 rs10409348 0.3107 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1304649_H GCST90001957 CD33 on CD33+ HLA DR+ CD14- 1,578 Sardinian (founder/genetic isolate) ancestry individuals G 0.57283 8E-19 18.097 rs10409348 0.3202 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1305507_H GCST90001947 CD33 on CD33+ HLA DR+ CD14dim 1,577 Sardinian (founder/genetic isolate) ancestry individuals G 0.5728800000000001 6E-15 14.222 rs10409348 0.2826 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1305647_H GCST90001948 CD33 on CD33dim HLA DR+ CD11b+ 1,633 Sardinian (founder/genetic isolate) ancestry individuals G 0.5789500000000001 4E-29 28.398 rs10409348 0.3998 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1305651_H GCST90001949 CD33 on CD33dim HLA DR+ CD11b- 1,634 Sardinian (founder/genetic isolate) ancestry individuals G 0.5785899999999999 3E-25 24.523 rs10409348 0.3713 blood protein measurement (EFO:0007937)
 PMID:32929287
GWAS1305808_H GCST90001952 CD33 on Monocytic Myeloid-Derived Suppressor Cells 1,569 Sardinian (founder/genetic isolate) ancestry individuals G 0.57134 6E-14 13.222 rs10409348 0.2725 blood protein measurement (EFO:0007937)
 PMID:32929287
Database
Acc Id
Source(s)
GWAS Catalog GCST90001946 GWAS Catalog

Note Type Note Reference