GWAS1304780_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1304780_H (depressive symptom measurement QTL GWAS1304780 (human)) Homo sapiens

Symbol: GWAS1304780_H
Name: depressive symptom measurement QTL GWAS1304780 (human)
RGD ID: 597208706
Trait: depressive symptom measurement
LOD Score: Not Available
P Value: 8.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3818,477,229 - 8,477,230RGD_MAPPER_PIPELINEGRCh38
GRCh3718,537,289 - 8,537,290RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1304780_HHumandepressive symptom measurement  IAGPrs1884352405850206 GWAS_CATALOGPMID:30643256

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1344336REREarginine-glutamic acid dipeptide repeats183524048817640Human


Peak: (rs1884352)
Human AssemblyChrPosition (strand)Source
GRCh3818,477,229 - 8,477,230RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597208706GWAS1304780_Hdepressive symptom measurement QTL GWAS1304780 (human)8e-12depressive symptom measurement184772298477230Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597204951GWAS1301025_Hneuroticism measurement QTL GWAS1301025 (human)1e-11wellness/fitness trait (VT:1000152)184772298477230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1304780_H GCST007340 Depressive symptoms 1,067,913 European ancestry individuals A 0.607147548381289 8E-12 11.097 rs1884352 0.006651864 depressive symptom measurement (EFO:0007006)
 PMID:30643256
GWAS1301025_H GCST007339 Neuroticism 523,783 European ancestry individuals A 0.607147548381289 1E-11 11 rs1884352 0.01034296 neuroticism measurement (EFO:0007660)
 PMID:30643256
None Available GCST007338 Positive affect 410,603 European ancestry individuals A 0.607147548381289 1E-11 11 rs1884352 0.007971245 wellbeing measurement (EFO:0007869)
 PMID:30643256
Database
Acc Id
Source(s)
GWAS Catalog GCST007340 GWAS Catalog

Note Type Note Reference