GWAS1299505_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1299505_H (neuroticism measurement QTL GWAS1299505 (human)) Homo sapiens

Symbol: GWAS1299505_H
Name: neuroticism measurement QTL GWAS1299505 (human)
RGD ID: 597203431
Trait: neuroticism measurement
LOD Score: Not Available
P Value: 4.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381113,314,379 - 13,314,380RGD_MAPPER_PIPELINEGRCh38
GRCh371113,335,926 - 13,335,927RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1299505_HHumanneuroticism measurement  IAGPrs11022762405850206 GWAS_CATALOGPMID:31972866

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732520BMAL1basic helix-loop-helix ARNT like 1111327665213387266Human


Peak: (rs11022762)
Human AssemblyChrPosition (strand)Source
GRCh381113,314,379 - 13,314,380RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1576345LVC1_HLeft ventricular contractility QTL 1 (human)3.93Left ventricular contractility11797076733970767Human
407055938GWAS704914_Hhematocrit QTL GWAS704914 (human)4e-17hematocrithematocrit (CMO:0000037)111331437913314380Human
407380921GWAS1029897_Hhemoglobin measurement QTL GWAS1029897 (human)1e-15hemoglobin measurementhemoglobin measurement (CMO:0000508)111331437913314380Human
2289313BW388_HBody weight QTL 388 (human)1.570.00356Body fat amountabdominal11443467130434671Human
1559107SCL32_HSerum cholesterol level QTL 32 (human)3.27Lipid levelLDL cholesterol11289243028892430Human
597227517GWAS1323591_Hworry measurement QTL GWAS1323591 (human)7e-11worry measurement111331437913314380Human
597295644GWAS1391718_Hhematocrit QTL GWAS1391718 (human)4e-10hematocrithematocrit (CMO:0000037)111331437913314380Human
597310909GWAS1406983_Herythrocyte count QTL GWAS1406983 (human)1e-11erythrocyte countred blood cell count (CMO:0000025)111331437913314380Human
597284675GWAS1380749_Hhemoglobin measurement QTL GWAS1380749 (human)2e-10hemoglobin measurementhemoglobin measurement (CMO:0000508)111331437913314380Human
1559113SCL31_HSerum cholesterol level QTL 31 (human)3.72Lipid levelLDL cholesterol11289243028892430Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1299505_H GCST010123 Sensitivity to environmental stress and adversity 351,827 European ancestry individuals T NR 4E-12 11.398 rs11022762 0.01662 neuroticism measurement (EFO:0007660)
 PMID:31972866
GWAS704914_H GCST90002383 Hematocrit 408,112 British individuals T 0.38337 4E-17 16.398 rs11022762 0.019121908 hematocrit (EFO:0004348)
 PMID:32888494
GWAS1323591_H GCST007708 Worry/vulnerability (special factor of neuroticism) 270,059 British ancestry individuals C NR 7E-11 10.155 rs11022762 0.0089157 worry measurement (EFO:0009589)
 PMID:30867560
GWAS1380749_H GCST90018957 Hemoglobin 350,474 European ancestry individuals, 152,447 East Asian ancestry individuals T NR 2E-10 9.699 rs11022762 0.0107 hemoglobin measurement (EFO:0004509)
 PMID:34594039
GWAS1391718_H GCST90018960 Hematocrit 350,475 European ancestry individuals, 153,015 East Asian ancestry individuals T NR 4E-10 9.398 rs11022762 0.0107 hematocrit (EFO:0004348)
 PMID:34594039
GWAS1406983_H GCST90018971 Red blood cell count 350,475 European ancestry individuals, 153,512 East Asian ancestry individuals T NR 1E-11 11 rs11022762 0.012 erythrocyte count (EFO:0004305)
 PMID:34594039
GWAS1029897_H GCST90002384 Hemoglobin 408,112 British individuals T 0.383346 1E-15 15 rs11022762 0.018184219 hemoglobin measurement (EFO:0004509)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST010123 GWAS Catalog

Note Type Note Reference