GWAS1296197_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1296197_H (electrocardiography QTL GWAS1296197 (human)) Homo sapiens

Symbol: GWAS1296197_H
Name: electrocardiography QTL GWAS1296197 (human)
RGD ID: 597200123
Trait: electrocardiography
LOD Score: Not Available
P Value: 7.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3816,219,310 - 6,219,311RGD_MAPPER_PIPELINEGRCh38
GRCh3716,279,370 - 6,279,371RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1296197_HHumanelectrocardiography  IAGPrs846111405850206 GWAS_CATALOGPMID:32916098

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1603826RNF207ring finger protein 207162061196221299Human


Peak: (rs846111)
Human AssemblyChrPosition (strand)Source
GRCh3816,219,310 - 6,219,311RGD_MAPPER_PIPELINE


1 to 10 of 56 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597317272GWAS1413346_HJT interval QTL GWAS1413346 (human)2e-202heart electrical impulse conduction trait (VT:2000017)heart electrical conduction measurement (CMO:0000230)162193106219311Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597204118GWAS1300192_Hhypertrophic cardiomyopathy QTL GWAS1300192 (human)0.0000006hypertrophic cardiomyopathy162193106219311Human
597618956GWAS1675816_Hartificial cardiac pacemaker QTL GWAS1675816 (human)2e-12artificial cardiac pacemaker162193106219311Human
407027033GWAS676009_HQT interval QTL GWAS676009 (human)4e-16QT intervalQT interval (CMO:0000235)162193106219311Human
597214008GWAS1310082_Helectrocardiography QTL GWAS1310082 (human)7e-22electrocardiography162193106219311Human
407021411GWAS670387_HQT interval QTL GWAS670387 (human)1e-16QT intervalQT interval (CMO:0000235)162193106219311Human
597214009GWAS1310083_Helectrocardiography QTL GWAS1310083 (human)3e-22electrocardiography162193106219311Human
597214010GWAS1310084_Helectrocardiography QTL GWAS1310084 (human)8e-23electrocardiography162193106219311Human

1 to 10 of 56 rows


1 to 20 of 62 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1296197_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 7E-15 14.155 rs846111 0.0495789 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1646581_H GCST90475960 Cardiac pacemaker in situ (PheCode 426.91) 18,459 European ancestry cases, 427,553 European ancestry controls G 0.7258 2E-13 12.699 rs846111 0.088 artificial cardiac pacemaker (EFO:0009719)
 PMID:39024449
GWAS670387_H GCST000363 QT interval 13,685 European ancestry individuals C 0.28 1E-16 16 rs846111 1.75 QT interval (EFO:0004682)
 PMID:19305408
GWAS676009_H GCST000364 QT interval 15,842 European ancestry individuals C 0.29 4E-16 15.398 rs846111 1.49 QT interval (EFO:0004682)
 PMID:19305409
GWAS1181616_H GCST011010 Electrocardiographic traits (multivariate) 17,873 European ancestry individuals, 12,749 Hispanic individuals, 5,408 African American individuals, 315 Chinese-American individuals ? NR 1E-11 11 rs846111 N/A electrocardiography (EFO:0004327)
 PMID:32602732
GWAS687852_H GCST002500 QT interval Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals C 0.283 7E-40 39.155 rs846111 1.73 QT interval (EFO:0004682)
 PMID:24952745
GWAS1208229_H GCST008043 QT interval 3,293 African American individuals, 13,698 Hispanic/Latino individuals, 127 Asian ancestry individuals, 230 Native American ancestry individuals ? NR 2E-11 10.699 rs846111 1.919251 QT interval (EFO:0004682)
 PMID:31217584
GWAS1675816_H GCST90480161 Cardiac pacemaker in situ (PheCode 426.91) 2,348 African American or Afro-Caribbean cases, 118,689 African American or Afro-Caribbean controls, 18,459 European ancestry cases, 427,553 European ancestry controls, 1,142 Hispanic or Latin American cases, 58,442 Hispanic or Latin American controls G 0.7773 2E-12 11.699 rs846111 0.08652 artificial cardiac pacemaker (EFO:0009719)
 PMID:39024449
GWAS1236385_H GCST90239776 Heart failure (multivariate analysis) 17,917 African ancestry individuals, 4,293 admixed ancestry individuals, 47,934 East Asian ancestry individuals, 343,120 European ancestry individuals ? NR 6E-9 8.222 rs846111 0.01549684 heart failure (EFO:0003144)
 PMID:36376295
GWAS1295737_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-24 23.699 rs846111 0.0618096 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1295738_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 5E-25 24.302 rs846111 0.0630265 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1295739_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-25 24.699 rs846111 0.0635616 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1295740_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 1E-25 25 rs846111 0.0643005 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1295741_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-26 25.699 rs846111 0.0654603 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1295742_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 5E-27 26.302 rs846111 0.0662487 electrocardiography (EFO:0004327)
 PMID:32916098
None Available GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 2E-26 25.699 rs846111 0.0656379 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1296187_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 3E-26 25.523 rs846111 0.0654916 electrocardiography (EFO:0004327)
 PMID:32916098
None Available GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 1E-25 25 rs846111 0.0650066 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1296188_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 1E-24 24 rs846111 0.0638731 electrocardiography (EFO:0004327)
 PMID:32916098
GWAS1296189_H GCST010796 Electrocardiogram morphology (amplitude at temporal datapoints) 63,706 European and unknown ancestry individuals G 0.734546 8E-25 24.097 rs846111 0.0639078 electrocardiography (EFO:0004327)
 PMID:32916098
1 to 20 of 62 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST010796 GWAS Catalog

Note Type Note Reference