GWAS1292811_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1292811_H (lean body mass QTL GWAS1292811 (human)) Homo sapiens

Symbol: GWAS1292811_H
Name: lean body mass QTL GWAS1292811 (human)
RGD ID: 597196737
Trait: body lean mass   (VT:0010483)    
Measurement Type: total body lean mass   (CMO:0003950)    
LOD Score: Not Available
P Value: 9.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38625,685,264 - 25,685,265RGD_MAPPER_PIPELINEGRCh38
GRCh37625,685,492 - 25,685,493RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1292811_HHumantotal body lean mass  IAGPrs2205936405850206 GWAS_CATALOGPMID:38538606

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1292811_HHumanbody lean mass  IAGPrs2205936405850206 GWAS_CATALOGPMID:38538606

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1292811_HHumanlean body mass  IAGPrs2205936405850206 GWAS_CATALOGPMID:38538606

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1347901SCGNsecretagogin, EF-hand calcium binding protein62565221525701783Human
151672878LOC124901284uncharacterized LOC12490128462568187325698974Human


Peak: (rs2205936)
Human AssemblyChrPosition (strand)Source
GRCh38625,685,264 - 25,685,265RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
597196737GWAS1292811_Hlean body mass QTL GWAS1292811 (human)9e-09body lean mass (VT:0010483)total body lean mass (CMO:0003950)62568526425685265Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1292811_H GCST90428120 Whole body fat free mass (UKB data field 23101) 337,739 European ancestry individuals C NR 9E-9 8.046 rs2205936 0.00776878 lean body mass (EFO:0004995)
 PMID:38538606
Database
Acc Id
Source(s)
GWAS Catalog GCST90428120 GWAS Catalog

Note Type Note Reference