GWAS1286552_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1286552_H (level of Phosphatidylinositol (18:0_20:3) in blood serum QTL GWAS1286552 (human)) Homo sapiens

Symbol: GWAS1286552_H
Name: level of Phosphatidylinositol (18:0_20:3) in blood serum QTL GWAS1286552 (human)
RGD ID: 597190478
Trait: level of Phosphatidylinositol (18:0_20:3) in blood serum
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,432,643 - 58,432,644RGD_MAPPER_PIPELINEGRCh38
GRCh371558,724,842 - 58,724,843RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1286552_HHumanlevel of Phosphatidylinositol (18:0_20:3) in blood serum  IAGPrs8033940405850206 GWAS_CATALOGPMID:36193934

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736877LIPClipase C, hepatic type155843199158569844Human


Peak: (rs8033940)
Human AssemblyChrPosition (strand)Source
GRCh381558,432,643 - 58,432,644RGD_MAPPER_PIPELINE


1 to 10 of 50 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597245077GWAS1341151_Hhigh density lipoprotein cholesterol measurement QTL GWAS1341151 (human)2e-08high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155843264358432644Human
407056338GWAS705314_Hlevel of Phosphatidylethanolamine (18:1_18:1) in blood serum QTL GWAS705314 (human)0.0000006level of Phosphatidylethanolamine (18:1_18:1) in blood serum155843264358432644Human
596969732GWAS1089251_Hhigh density lipoprotein cholesterol measurement QTL GWAS1089251 (human)1e-10esterified cholesterol measurement, high density lipoprotein cholesterol measurement155843264358432644Human
407072592GWAS721568_Hlevel of Phosphatidylcholine (18:1_18:1) in blood serum QTL GWAS721568 (human)0.0000009level of Phosphatidylcholine (18:1_18:1) in blood serum155843264358432644Human
597191179GWAS1287253_Hlevel of Phosphatidylcholine (18:1_18:2) in blood serum QTL GWAS1287253 (human)1e-09level of Phosphatidylcholine (18:1_18:2) in blood serumblood high density lipoprotein cholesterol level (CMO:0000052)155843264358432644Human
596969729GWAS1089248_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1089248 (human)5e-12lipid measurement, high density lipoprotein cholesterol measurement155843264358432644Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
407072596GWAS721572_Hlevel of Phosphatidylcholine (18:1_18:2) in blood serum QTL GWAS721572 (human)1e-09phospholipid measurement, high density lipoprotein cholesterol measurement155843264358432644Human
597244417GWAS1340491_Hhigh density lipoprotein cholesterol measurement QTL GWAS1340491 (human)0.0000001high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155843264358432644Human
596974351GWAS1093870_Hlevel of Phosphatidylcholine (16:0_18:3) in blood serum QTL GWAS1093870 (human)0.000008level of Phosphatidylcholine (16:0_18:3) in blood serum155843264358432644Human

1 to 10 of 50 rows


1 to 20 of 29 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1286552_H GCST90244495 Phosphatidylinositol (18:0_20:3) levels 4,642 European ancestry women A NR 0.000004 5.398 rs8033940 0.1137 level of Phosphatidylinositol (18:0_20:3) in blood serum (OBA:2045157)
 PMID:36193934
GWAS1216887_H GCST90060790 Phosphatidylcholine(37:6)_[M+H]1+/Phosphatidylethanolamine(40:6)_[M+H]1+/Phosphatidate(42:7)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals A NR 5E-10 9.302 rs8033940 0.0767 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060733 Phosphatidylethanolamine(38:5)_[M-H]1- levels 5,662 Pakistani ancestry individuals G NR 5E-10 9.302 rs8033940 0.0639 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060690 Phosphatidylethanolamine(36:4)_[M+H]1+ levels 5,662 Pakistani ancestry individuals C NR 5E-10 9.302 rs8033940 0.1028 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060777 Phosphatidylethanolamine(40:7)_[M-H]1- levels 5,662 Pakistani ancestry individuals C NR 5E-10 9.302 rs8033940 0.0737 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060665 Phosphatidylethanolamine(34:2)_[M+H]1+ levels 5,662 Pakistani ancestry individuals C NR 5E-10 9.302 rs8033940 0.0325 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060689 Phosphatidylethanolamine(36:4)_[M-H]1- levels 5,662 Pakistani ancestry individuals C NR 5E-10 9.302 rs8033940 0.0309 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:34503513
None Available GCST90060692 Phosphatidylcholine(33:3)_[M+H]1+/Phosphatidylethanolamine(36:3)_[M+H]1+/Phosphatidate(38:4)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals G NR 5E-10 9.302 rs8033940 0.0506 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060738 Phosphatidylcholine(35:4)_[M+H]1+/Phosphatidylethanolamine(38:4)_[M+H]1+/Phosphatidate(40:5)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals G NR 5E-10 9.302 rs8033940 0.0711 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
None Available GCST90060696 Phosphatidylcholine(33:2)_[M+H]1+/Phosphatidylethanolamine(36:2)_[M+H]1+/Phosphatidate(38:3)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals G NR 5E-10 9.302 rs8033940 0.0711 phosphatidylcholine measurement (EFO:0010226)
 PMID:34503513
GWAS1739233_H GCST90091523 Fasting mean diameter of HDL particles null A 0.280516265 4E-10 9.398 rs8033940 0.142843 HDL particle size (OBA:2050115)
 PMID:34610981
GWAS1285624_H GCST90244302 Phosphatidylethanolamine (18:1_18:1) levels 2,624 European ancestry men A NR 6E-7 6.222 rs8033940 0.1497 level of Phosphatidylethanolamine (18:1_18:1) in blood serum (OBA:2045142)
 PMID:36193934
GWAS1285637_H GCST90244415 Phosphatidylcholine (16:0_18:3) levels 4,642 European ancestry women A NR 0.000008 5.097 rs8033940 0.1071 level of Phosphatidylcholine (16:0_18:3) in blood serum (OBA:2045072)
 PMID:36193934
GWAS1287249_H GCST90244440 Phosphatidylcholine (18:1_18:1) levels 4,642 European ancestry women A NR 9E-7 6.046 rs8033940 0.1184 level of Phosphatidylcholine (18:1_18:1) in blood serum (OBA:2045099)
 PMID:36193934
GWAS1287253_H GCST90244441 Phosphatidylcholine (18:1_18:2) levels 4,642 European ancestry women A NR 1E-9 9 rs8033940 0.1462 level of Phosphatidylcholine (18:1_18:2) in blood serum (OBA:2045100)
 PMID:36193934
GWAS1287826_H GCST90244432 Phosphatidylcholine (18:0_18:2) levels 4,642 European ancestry women A NR 4E-10 9.398 rs8033940 0.1499 level of Phosphatidylcholine (18:0_18:2) in blood serum (OBA:2045090)
 PMID:36193934
GWAS1315081_H GCST90091763 Postprandial free cholesterol in very large HDL null A 0.283130938 8E-11 10.097 rs8033940 0.158201 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1318697_H GCST90091761 Postprandial total cholesterol in very large HDL null A 0.283130938 1E-10 10 rs8033940 0.15739 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
None Available GCST90091762 Postprandial cholesterol esters in very large HDL null A 0.283130938 1E-10 10 rs8033940 0.155861 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1319030_H GCST90091621 Fasting total cholesterol in very large HDL null A 0.281375219 7E-12 11.155 rs8033940 0.159544 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
1 to 20 of 29 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90244495 GWAS Catalog

Note Type Note Reference