GWAS1286286_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1286286_H (sex hormone-binding globulin measurement QTL GWAS1286286 (human)) Homo sapiens

Symbol: GWAS1286286_H
Name: sex hormone-binding globulin measurement QTL GWAS1286286 (human)
RGD ID: 597190212
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 3.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381540,095,527 - 40,095,528RGD_MAPPER_PIPELINEGRCh38
GRCh371540,387,728 - 40,387,729RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1286286_HHumansex hormone-binding globulin measurement  IAGPrs11637595405850206 GWAS_CATALOGPMID:36653534

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1342866BMFBcl2 modifying factor154008789040108879Human


Peak: (rs11637595)
Human AssemblyChrPosition (strand)Source
GRCh381540,095,527 - 40,095,528RGD_MAPPER_PIPELINE


1 to 10 of 14 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
597097300GWAS1193374_Hsex hormone-binding globulin measurement QTL GWAS1193374 (human)1e-08sex hormone-binding globulin measurement154009552740095528Human
597155541GWAS1251615_Hsex hormone-binding globulin measurement QTL GWAS1251615 (human)5e-14sex hormone-binding globulin measurement154009552740095528Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
597105945GWAS1202019_Hsex hormone-binding globulin measurement QTL GWAS1202019 (human)2e-18sex hormone-binding globulin measurement154009552740095528Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
597158211GWAS1254285_Hsex hormone-binding globulin measurement QTL GWAS1254285 (human)4e-14sex hormone-binding globulin measurement154009552740095528Human

1 to 10 of 14 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1286286_H GCST90239822 Sex hormone-binding globulin levels 188,443 British ancestry women ? NR 3E-14 13.523 rs11637595 0.0261288 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:36653534
GWAS1193374_H GCST90012107 Sex hormone-binding globulin levels 189,473 European ancestry women C 0.723599 1E-8 8 rs11637595 0.00915883 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1202019_H GCST90012106 Sex hormone-binding globulin levels adjusted for BMI 188,908 European ancestry women C 0.723599 2E-18 17.699 rs11637595 0.0119621 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1251615_H GCST90104273 Sex hormone-binding globulin levels 196,901 European ancestry individuals T 0.271954 5E-14 13.302 rs11637595 0.0272021 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:35192695
GWAS1252596_H GCST90104277 Sex hormone-binding globulin levels in postmenopausal women 92,911 European ancestry individuals T 0.271954 2E-9 8.699 rs11637595 0.0317844 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:35192695
GWAS1254285_H GCST90104297 Sex hormone-binding globulin levels 4,522 African ancestry individuals, 196,901 European ancestry individuals ? NR 4E-14 13.398 rs11637595 7.577 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:35192695
None Available GCST90444202 Type 2 diabetes 51,256 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry cases, 370,487 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry controls C 0.736682 2E-9 8.699 rs11637595 0.0538 PMID:39379762
Database
Acc Id
Source(s)
GWAS Catalog GCST90239822 GWAS Catalog

Note Type Note Reference