GWAS1286016_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1286016_H (level of Phosphatidylethanolamine (18:1_18:1) in blood serum QTL GWAS1286016 (human)) Homo sapiens

Symbol: GWAS1286016_H
Name: level of Phosphatidylethanolamine (18:1_18:1) in blood serum QTL GWAS1286016 (human)
RGD ID: 597189942
Trait: level of Phosphatidylethanolamine (18:1_18:1) in blood serum
LOD Score: Not Available
P Value: 9.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381559,085,741 - 59,085,742RGD_MAPPER_PIPELINEGRCh38
GRCh371559,377,940 - 59,377,941RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1286016_HHumanlevel of Phosphatidylethanolamine (18:1_18:1) in blood serum  IAGPrs181181625405850206 GWAS_CATALOGPMID:36193934

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1320805RNF111ring finger protein 111155898766359097419Human


Peak: (rs181181625)
Human AssemblyChrPosition (strand)Source
GRCh381559,085,741 - 59,085,742RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597030231GWAS1126305_Hphosphatidylethanolamine measurement QTL GWAS1126305 (human)2e-09phosphatidylethanolamine measurement155908574159085742Human
597189562GWAS1285636_Hlevel of Phosphatidylcholine (16:0_18:3) in blood serum QTL GWAS1285636 (human)0.000007level of Phosphatidylcholine (16:0_18:3) in blood serum155908574159085742Human
597189547GWAS1285621_Hlevel of Phosphatidylethanolamine (18:0_20:4) in blood serum QTL GWAS1285621 (human)0.0000001level of Phosphatidylethanolamine (18:0_20:4) in blood serum155908574159085742Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597189937GWAS1286011_Hlevel of Phosphatidylethanolamine (18:0_20:4) in blood serum QTL GWAS1286011 (human)3e-19level of Phosphatidylethanolamine (18:0_20:4) in blood serum155908574159085742Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597190261GWAS1286335_Hlevel of Phosphatidylethanolamine (16:0_20:4) in blood serum QTL GWAS1286335 (human)2e-22level of Phosphatidylethanolamine (16:0_20:4) in blood serum155908574159085742Human
597189942GWAS1286016_Hlevel of Phosphatidylethanolamine (18:1_18:1) in blood serum QTL GWAS1286016 (human)9e-12level of Phosphatidylethanolamine (18:1_18:1) in blood serum155908574159085742Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1286016_H GCST90244481 Phosphatidylethanolamine (18:1_18:1) levels 4,642 European ancestry women T NR 9E-12 11.046 rs181181625 0.7423 level of Phosphatidylethanolamine (18:1_18:1) in blood serum (OBA:2045142)
 PMID:36193934
GWAS1126305_H GCST008929 Phosphatidylethanolamine levels 2,045 European ancestry individuals T NR 2E-9 8.699 rs181181625 0.7133 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:31551469
GWAS1285621_H GCST90244301 Phosphatidylethanolamine (18:0_20:4) levels 2,624 European ancestry men T NR 1E-7 7 rs181181625 0.6364 level of Phosphatidylethanolamine (18:0_20:4) in blood serum (OBA:2045140)
 PMID:36193934
GWAS1285636_H GCST90244415 Phosphatidylcholine (16:0_18:3) levels 4,642 European ancestry women T NR 0.000007 5.155 rs181181625 0.4852 level of Phosphatidylcholine (16:0_18:3) in blood serum (OBA:2045072)
 PMID:36193934
GWAS1286011_H GCST90244480 Phosphatidylethanolamine (18:0_20:4) levels 4,642 European ancestry women T NR 3E-19 18.523 rs181181625 0.9614 level of Phosphatidylethanolamine (18:0_20:4) in blood serum (OBA:2045140)
 PMID:36193934
GWAS1286335_H GCST90244478 Phosphatidylethanolamine (16:0_20:4) levels 4,642 European ancestry women T NR 2E-22 21.699 rs181181625 1.0528 level of Phosphatidylethanolamine (16:0_20:4) in blood serum (OBA:2045137)
 PMID:36193934
Database
Acc Id
Source(s)
GWAS Catalog GCST90244481 GWAS Catalog

Note Type Note Reference