GWAS1278005_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1278005_H (protein measurement QTL GWAS1278005 (human)) Homo sapiens

Symbol: GWAS1278005_H
Name: protein measurement QTL GWAS1278005 (human)
RGD ID: 597181931
Trait: protein measurement
LOD Score: Not Available
P Value: 3.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3817,737,674 - 7,737,675RGD_MAPPER_PIPELINEGRCh38
GRCh3717,797,734 - 7,797,735RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1278005_HHumanprotein measurement  IAGPrs1417986405850206 GWAS_CATALOGPMID:34648354

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1318785CAMTA1calmodulin binding transcription activator 1167854547769706Human


Peak: (rs1417986)
Human AssemblyChrPosition (strand)Source
GRCh3817,737,674 - 7,737,675RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597181931GWAS1278005_Hprotein measurement QTL GWAS1278005 (human)3e-16protein measurement177376747737675Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1278005_H GCST90248659 Neuromodulin levels 10,708 European ancestry individuals A 0.65 3E-16 15.523 rs1417986 0.109 protein measurement (EFO:0004747)
 PMID:34648354
GWAS1773801_H GCST90479709 mean platelet volume (MPV, minimum, inv-norm transformed) 97,007 African American or Afro-Caribbean individuals, 40,412 Hispanic or Latin American individuals, 3,825 East Asian ancestry individuals, 335,593 European ancestry individuals T 0.3776 3E-17 16.523 rs1417986 0.02919 platelet volume (OBA:0003277)
 PMID:39024449
GWAS1773993_H GCST90479708 mean platelet volume (MPV, mean, inv-norm transformed) 97,007 African American or Afro-Caribbean individuals, 40,412 Hispanic or Latin American individuals, 3,825 East Asian ancestry individuals, 335,593 European ancestry individuals T 0.3776 5E-21 20.302 rs1417986 0.03369 platelet volume (OBA:0003277)
 PMID:39024449
Database
Acc Id
Source(s)
GWAS Catalog GCST90248659 GWAS Catalog

Note Type Note Reference