GWAS1271251_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1271251_H (fatty acid measurement QTL GWAS1271251 (human)) Homo sapiens

Symbol: GWAS1271251_H
Name: fatty acid measurement QTL GWAS1271251 (human)
RGD ID: 597175177
Trait: fatty acid measurement
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,459,267 - 23,459,268RGD_MAPPER_PIPELINEGRCh38
GRCh37123,785,760 - 23,785,761RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1271251_HHumanfatty acid measurement  IAGPrs7551124405850206 GWAS_CATALOGPMID:36764567

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346642ASAP3ArfGAP with SH3 domain, ankyrin repeat and PH domain 312342856323484631Human


Peak: (rs7551124)
Human AssemblyChrPosition (strand)Source
GRCh38123,459,267 - 23,459,268RGD_MAPPER_PIPELINE


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597146391GWAS1242465_Hlow density lipoprotein cholesterol measurement QTL GWAS1242465 (human)1e-19low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)12345926723459268Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597272855GWAS1368929_Htriglyceride measurement QTL GWAS1368929 (human)1e-11triglyceride measurementblood triglyceride level (CMO:0000118)12345926723459268Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597323051GWAS1419125_Hnon-high density lipoprotein cholesterol measurement QTL GWAS1419125 (human)2e-14non-high density lipoprotein cholesterol measurementblood non-high density lipoprotein cholesterol level (CMO:0003967)12345926723459268Human
597175177GWAS1271251_Hfatty acid measurement QTL GWAS1271251 (human)1e-09fatty acid measurement12345926723459268Human
597258250GWAS1354324_Htotal cholesterol measurement QTL GWAS1354324 (human)5e-28total cholesterol measurementblood total cholesterol level (CMO:0000051)12345926723459268Human
597326382GWAS1422456_Hnon-high density lipoprotein cholesterol measurement QTL GWAS1422456 (human)1e-17non-high density lipoprotein cholesterol measurementblood non-high density lipoprotein cholesterol level (CMO:0003967)12345926723459268Human

1 to 10 of 13 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1271251_H GCST90269539 Total fatty acids levels (UKB data field 23442) 88,268 European ancestry individuals C 0.124342 1E-9 9 rs7551124 0.0431274 fatty acid measurement (EFO:0005110)
 PMID:36764567
GWAS1242465_H GCST90179148 Low-density lipoprotein levels (MTAG) 361,194 European ancestry individuals T NR 1E-19 19 rs7551124 0.019033 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36376304
GWAS1354324_H GCST90239676 Total cholesterol levels 1,320,016 European ancestry individuals T 0.873919 5E-28 27.302 rs7551124 0.0265828 total cholesterol measurement (EFO:0004574)
 PMID:34887591
GWAS1368591_H GCST90239658 Low density lipoprotein cholesterol levels 1,320,016 European ancestry individuals T 0.874157 4E-12 11.398 rs7551124 0.0168091 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
GWAS1368929_H GCST90239664 Triglyceride levels 1,320,016 European ancestry individuals T 0.874163 1E-11 11 rs7551124 0.0174888 triglyceride measurement (EFO:0004530)
 PMID:34887591
GWAS1419125_H GCST90239670 Non-HDL cholesterol levels 1,320,016 European ancestry individuals C 0.126881 2E-14 13.699 rs7551124 0.0220162 non-high density lipoprotein cholesterol measurement (EFO:0005689)
 PMID:34887591
GWAS1422456_H GCST90239667 Non-HDL cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 1E-17 17 rs7551124 N/A non-high density lipoprotein cholesterol measurement (EFO:0005689)
 PMID:34887591
GWAS1523701_H GCST90455669 Serum urate levels 630,117 European ancestry individuals T 0.8742 7E-9 8.155 rs7551124 0.02 urate measurement (EFO:0004531)
 PMID:39406924
Database
Acc Id
Source(s)
GWAS Catalog GCST90269539 GWAS Catalog

Note Type Note Reference