GWAS1271155_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1271155_H (phospholipids:total lipids ratio QTL GWAS1271155 (human)) Homo sapiens

Symbol: GWAS1271155_H
Name: phospholipids:total lipids ratio QTL GWAS1271155 (human)
RGD ID: 597175081
Trait: phospholipids:total lipids ratio
LOD Score: Not Available
P Value: 1.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381543,331,199 - 43,331,200RGD_MAPPER_PIPELINEGRCh38
GRCh371543,623,397 - 43,623,398RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1271155_HHumanphospholipids:total lipids ratio  IAGPrs45617141405850206 GWAS_CATALOGPMID:36764567

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1605272MAPDAN6-Methyl-AMP deaminase154333035143354569Human
155778720LOC127829416H3K27ac hESC enhancer GRCh37_chr15:43622679-43623629154333048143331431Human


Peak: (rs45617141)
Human AssemblyChrPosition (strand)Source
GRCh381543,331,199 - 43,331,200RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597175081GWAS1271155_Hphospholipids:total lipids ratio QTL GWAS1271155 (human)1e-14phospholipids:total lipids ratio154333119943331200Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597184911GWAS1280985_Hcholesterol to total lipids in medium LDL percentage QTL GWAS1280985 (human)4e-14cholesterol to total lipids in medium LDL percentage 154333119943331200Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1271155_H GCST90269731 Phospholipids to total lipids in large HDL percentage (UKB data field 23634) 88,329 European ancestry individuals G 0.0161371 1E-14 14 rs45617141 0.149205 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
GWAS1742433_H GCST90012023 Stem cell factor levels 21,758 European ancestry individuals T 0.98 8E-12 11.097 rs45617141 0.246 kit ligand amount (OBA:2050260)
 PMID:33067605
GWAS1280985_H GCST90269717 Cholesterol to total lipids in medium LDL percentage (UKB data field 23620) 88,329 European ancestry individuals G 0.0161371 4E-14 13.398 rs45617141 0.150418 cholesterol to total lipids in medium LDL percentage (EFO:0022238)
 PMID:36764567
Database
Acc Id
Source(s)
GWAS Catalog GCST90269731 GWAS Catalog

Note Type Note Reference