GWAS1263984_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1263984_H (atopic eczema QTL GWAS1263984 (human)) Homo sapiens

Symbol: GWAS1263984_H
Name: atopic eczema QTL GWAS1263984 (human)
RGD ID: 597167910
Trait: atopic eczema
LOD Score: Not Available
P Value: 3.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38819,515,754 - 19,515,755RGD_MAPPER_PIPELINEGRCh38
GRCh37819,373,265 - 19,373,266RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1263984_HHumanatopic dermatitis  IAGPrs4554481405850206 GWAS_CATALOGPMID:32439431

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1263984_HHumanAtopic dermatitis  IAGPrs4554481405850206 GWAS_CATALOGPMID:32439431
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1263984_HHumanatopic eczema  IAGPrs4554481405850206 GWAS_CATALOGPMID:32439431

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1601858CSGALNACT1chondroitin sulfate N-acetylgalactosaminyltransferase 181940416119757908Human


Peak: (rs4554481)
Human AssemblyChrPosition (strand)Source
GRCh38819,515,754 - 19,515,755RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human
597167910GWAS1263984_Hatopic eczema QTL GWAS1263984 (human)3e-11atopic eczema81951575419515755Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1263984_H GCST90086172 Atopic dermatitis (moderate to severe) 222 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR moderate to severe atopic dermatitis cases, 2,466 South East Asian ancestry, East Asian ancestry, South Asian ancestry, African American or Afro-Caribbean, European ancestry, Greater Middle Eastern (Middle Eastern, North African or Persian) cases, 2,466 Greater Middle Eastern (Middle Eastern, North African or Persian), Hispanic or Latin American, NR controls without moderate to severe atopic dermatitis C NR 3E-11 10.523 rs4554481 N/A atopic eczema (EFO:0000274)
 PMID:32439431
Database
Acc Id
Source(s)
GWAS Catalog GCST90086172 GWAS Catalog

Note Type Note Reference