GWAS1263279_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1263279_H (urolithiasis QTL GWAS1263279 (human)) Homo sapiens

Symbol: GWAS1263279_H
Name: urolithiasis QTL GWAS1263279 (human)
RGD ID: 597167205
Trait: urolithiasis
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38121,511,262 - 21,511,263RGD_MAPPER_PIPELINEGRCh38
GRCh37121,837,755 - 21,837,756RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346147ALPLalkaline phosphatase, biomineralization associated12150898421578410Human


Peak: (rs16825455)
Human AssemblyChrPosition (strand)Source
GRCh38121,511,262 - 21,511,263RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
406942073GWAS591049_Hresponse to antineoplastic agent, trait in response to platinum QTL GWAS591049 (human)0.000009response to antineoplastic agent, trait in response to platinum12151126221511263Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597167205GWAS1263279_Hurolithiasis QTL GWAS1263279 (human)1e-11urolithiasis12151126221511263Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1263279_H GCST90018715 Urolithiasis 11,699 East Asian ancestry cases, 167,027 East Asian ancestry controls G 0.381208803 1E-11 11 rs16825455 0.09984599 PMID:34594039
GWAS591049_H GCST001998 Adverse response to chemotherapy (neutropenia/leucopenia) (all platinum-based drugs) 428 Japanese ancestry cases, 743 Japanese ancestry controls T 0.605 0.000009 5.046 rs16825455 1.425 response to antineoplastic agent (GO:0097327)
trait in response to platinum (OBA:2040037)
 PMID:23648065
GWAS1755933_H GCST90318224 Cerebrospinal fluid choline phosphate levels 2,602 European ancestry individuals A NR 5E-24 23.302 rs16825455 0.0598 cerebrospinal fluid composition attribute (OBA:2045291)
choline phosphate measurement (EFO:0800617)
 PMID:39528826
Database
Acc Id
Source(s)
GWAS Catalog GCST90018715 GWAS Catalog

Note Type Note Reference