GWAS1262888_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1262888_H (Periodontal Pocket QTL GWAS1262888 (human)) Homo sapiens

Symbol: GWAS1262888_H
Name: Periodontal Pocket QTL GWAS1262888 (human)
RGD ID: 597166814
Trait: Periodontal Pocket
LOD Score: Not Available
P Value: 3.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381559,507,444 - 59,507,445RGD_MAPPER_PIPELINEGRCh38
GRCh371559,799,643 - 59,799,644RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1262888_HHumanPeriodontal Pocket  IAGPrs16941452405850206 GWAS_CATALOGPMID:34847907

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1262888_HHumanPeriodontal Pocket  IAGPrs16941452405850206 GWAS_CATALOGPMID:34847907

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1603268FAM81Afamily with sequence similarity 81 member A155939798159523555Human


Peak: (rs16941452)
Human AssemblyChrPosition (strand)Source
GRCh381559,507,444 - 59,507,445RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597166814GWAS1262888_HPeriodontal Pocket QTL GWAS1262888 (human)0.000003Periodontal Pocket155950744459507445Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1262888_H GCST90093140 Periodontal pocket (adjusted for age, sex and smoking status) 3,906 Finnish ancestry individuals G 0.022 0.000003 5.523 rs16941452 N/A Periodontal Pocket (EFO:1001393)
 PMID:34847907
Database
Acc Id
Source(s)
GWAS Catalog GCST90093140 GWAS Catalog

Note Type Note Reference