GWAS1261689_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1261689_H (sclerosing cholangitis QTL GWAS1261689 (human)) Homo sapiens

Symbol: GWAS1261689_H
Name: sclerosing cholangitis QTL GWAS1261689 (human)
RGD ID: 597165615
Trait: sclerosing cholangitis
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381611,065,028 - 11,065,029RGD_MAPPER_PIPELINEGRCh38
GRCh371611,158,885 - 11,158,886RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1261689_HHumansclerosing cholangitis  IAGPrs887864405850206 GWAS_CATALOGPMID:38490347

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1261689_HHumanSclerosing cholangitis  IAGPrs887864405850206 GWAS_CATALOGPMID:38490347
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1261689_HHumansclerosing cholangitis  IAGPrs887864405850206 GWAS_CATALOGPMID:38490347

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604037CLEC16AC-type lectin domain containing 16A161094456411182186Human


Peak: (rs887864)
Human AssemblyChrPosition (strand)Source
GRCh381611,065,028 - 11,065,029RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597165615GWAS1261689_Hsclerosing cholangitis QTL GWAS1261689 (human)0.000006sclerosing cholangitis161106502811065029Human
596968797GWAS1088316_Hsclerosing cholangitis QTL GWAS1088316 (human)0.000006sclerosing cholangitis161106502811065029Human
407023660GWAS672636_Hseasonal allergic rhinitis QTL GWAS672636 (human)0.000001seasonal allergic rhinitis161106502811065029Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1261689_H GCST90435159 Extraintestinal manifestations in inflammatory bowel disease (primary sclerosing cholangitis) 286 European ancestry cases, 11,738 European ancestry controls G NR 0.000006 5.222 rs887864 0.3375 sclerosing cholangitis (EFO:0004268)
 PMID:38490347
GWAS672636_H GCST001310 Allergic rhinitis 3,933 European ancestry cases, 8,965 European ancestry controls A 0.63 0.000001 6 rs887864 1.16 seasonal allergic rhinitis (EFO:0003956)
 PMID:22036096
Database
Acc Id
Source(s)
GWAS Catalog GCST90435159 GWAS Catalog

Note Type Note Reference