GWAS1260050_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1260050_H (non-alcoholic fatty liver disease QTL GWAS1260050 (human)) Homo sapiens

Symbol: GWAS1260050_H
Name: non-alcoholic fatty liver disease QTL GWAS1260050 (human)
RGD ID: 597163976
Trait: non-alcoholic fatty liver disease
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382046,978,214 - 46,978,215RGD_MAPPER_PIPELINEGRCh38
GRCh372045,606,853 - 45,606,854RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1260050_HHumanmetabolic dysfunction-associated steatotic liver disease  IAGPrs6066150405850206 GWAS_CATALOGPMID:35047847

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1260050_HHumanHepatic steatosis  IAGPrs6066150405850206 GWAS_CATALOGPMID:35047847
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1260050_HHumannon-alcoholic fatty liver disease  IAGPrs6066150405850206 GWAS_CATALOGPMID:35047847

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350703EYA2EYA transcriptional coactivator and phosphatase 2204689484347188844Human


Peak: (rs6066150)
Human AssemblyChrPosition (strand)Source
GRCh382046,978,214 - 46,978,215RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
597041306GWAS1137380_Htriglyceride measurement QTL GWAS1137380 (human)1e-10triglyceride measurementblood triglyceride level (CMO:0000118)204697821446978215Human
597163976GWAS1260050_Hnon-alcoholic fatty liver disease QTL GWAS1260050 (human)3e-08non-alcoholic fatty liver disease204697821446978215Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1260050_H GCST90094908 Nonalcoholic fatty liver disease (imputed) 28,396 European ancestry cases, 108,652 European ancestry controls ? NR 3E-8 7.523 rs6066150 0.0056419 non-alcoholic fatty liver disease (EFO:0003095)
 PMID:35047847
GWAS1137380_H GCST010173 Triglyceride levels 324,694 British ancestry individuals ? NR 1E-10 10 rs6066150 0.019 triglyceride measurement (EFO:0004530)
 PMID:32154731
Database
Acc Id
Source(s)
GWAS Catalog GCST90094908 GWAS Catalog

Note Type Note Reference