GWAS1259946_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1259946_H (serum metabolite measurement QTL GWAS1259946 (human)) Homo sapiens

Symbol: GWAS1259946_H
Name: serum metabolite measurement QTL GWAS1259946 (human)
RGD ID: 597163872
Trait: serum metabolite measurement
LOD Score: Not Available
P Value: 1.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38115,482,272 - 15,482,273RGD_MAPPER_PIPELINEGRCh38
GRCh37115,808,767 - 15,808,768RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1259946_HHumanserum metabolite measurement  IAGPrs3820071405850206 GWAS_CATALOGPMID:31882771

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1606295CELA2Bchymotrypsin like elastase 2B11547610415491395Human


Peak: (rs3820071)
Human AssemblyChrPosition (strand)Source
GRCh38115,482,272 - 15,482,273RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597214671GWAS1310745_Hbody mass index QTL GWAS1310745 (human)9e-10body mass indexbody mass index (BMI) (CMO:0000105)11548227215482273Human
597163872GWAS1259946_Hserum metabolite measurement QTL GWAS1259946 (human)1e-10serum metabolite measurement11548227215482273Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1259946_H GCST90134193 Beta-guanidinopropanoate levels in elite athletes 490 individuals ? NR 1E-10 10 rs3820071 0.6220838 serum metabolite measurement (EFO:0005653)
 PMID:31882771
GWAS1310745_H GCST008129 Body mass index up to 449,889 European ancestry individuals, up to 29,398 South Asian ancestry individuals, up to 27,610 African American individuals, up to 8,839 East Asian individuals, up to 10,772 Hispanic ancestry individuals G 0.741 9E-10 9.046 rs3820071 0.0123 body mass index (EFO:0004340)
 PMID:29273807
Database
Acc Id
Source(s)
GWAS Catalog GCST90134193 GWAS Catalog

Note Type Note Reference