GWAS1257822_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1257822_H (monocyte count QTL GWAS1257822 (human)) Homo sapiens

Symbol: GWAS1257822_H
Name: monocyte count QTL GWAS1257822 (human)
RGD ID: 597161748
Trait: monocyte quantity   (VT:0000223)    
Measurement Type: blood monocyte count   (CMO:0000032)    
LOD Score: Not Available
P Value: 8.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381541,937,654 - 41,937,655RGD_MAPPER_PIPELINEGRCh38
GRCh371542,229,852 - 42,229,853RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1257822_HHumanblood monocyte count  IAGPrs10518743405850206 GWAS_CATALOGPMID:34594039

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1257822_HHumanmonocyte quantity  IAGPrs10518743405850206 GWAS_CATALOGPMID:34594039

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1257822_HHumanmonocyte count  IAGPrs10518743405850206 GWAS_CATALOGPMID:34594039

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
734140EHD4EH domain containing 4154189593341972557Human


Peak: (rs10518743)
Human AssemblyChrPosition (strand)Source
GRCh381541,937,654 - 41,937,655RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597161748GWAS1257822_Hmonocyte count QTL GWAS1257822 (human)8e-12monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)154193765441937655Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
597081354GWAS1177428_Hmonocyte count QTL GWAS1177428 (human)5e-11monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)154193765441937655Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1257822_H GCST90018747 Monocyte count 95,119 East Asian ancestry individuals T 0.127696 8E-12 11.097 rs10518743 0.0449759 monocyte count (EFO:0005091)
 PMID:34594039
GWAS1177428_H GCST90002341 Monocyte count 88,929 East Asian ancestry individuals C 0.871798 5E-11 10.302 rs10518743 0.046945 monocyte count (EFO:0005091)
 PMID:32888493
Database
Acc Id
Source(s)
GWAS Catalog GCST90018747 GWAS Catalog

Note Type Note Reference