GWAS1253075_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1253075_H (sex hormone-binding globulin measurement QTL GWAS1253075 (human)) Homo sapiens

Symbol: GWAS1253075_H
Name: sex hormone-binding globulin measurement QTL GWAS1253075 (human)
RGD ID: 597157001
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 9.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381113,339,458 - 13,339,459RGD_MAPPER_PIPELINEGRCh38
GRCh371113,361,005 - 13,361,006RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1253075_HHumansex hormone-binding globulin measurement  IAGPrs1037169405850206 GWAS_CATALOGPMID:35192695

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732520BMAL1basic helix-loop-helix ARNT like 1111327665213387266Human


Peak: (rs1037169)
Human AssemblyChrPosition (strand)Source
GRCh381113,339,458 - 13,339,459RGD_MAPPER_PIPELINE


1 to 10 of 20 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1576345LVC1_HLeft ventricular contractility QTL 1 (human)3.93Left ventricular contractility11797076733970767Human
2289313BW388_HBody weight QTL 388 (human)1.570.00356Body fat amountabdominal11443467130434671Human
597194812GWAS1290886_Hfree androgen index QTL GWAS1290886 (human)2e-09free androgen index111333945813339459Human
597278847GWAS1374921_Hsex hormone-binding globulin measurement QTL GWAS1374921 (human)9e-11sex hormone-binding globulin measurement111333945813339459Human
597189598GWAS1285672_Hsex hormone-binding globulin measurement QTL GWAS1285672 (human)3e-15sex hormone-binding globulin measurement111333945813339459Human
597189809GWAS1285883_Hfree androgen index QTL GWAS1285883 (human)1e-08sex hormone-binding globulin measurement111333945813339459Human
597339504GWAS1435578_Hcomplex trait QTL GWAS1435578 (human)4e-08complex trait111333945813339459Human
597107644GWAS1203718_Hsex hormone-binding globulin measurement QTL GWAS1203718 (human)5e-24sex hormone-binding globulin measurement111333945813339459Human
597099258GWAS1195332_Hsex hormone-binding globulin measurement QTL GWAS1195332 (human)1e-41sex hormone-binding globulin measurement111333945813339459Human
597155975GWAS1252049_Hsex hormone-binding globulin measurement QTL GWAS1252049 (human)2e-12sex hormone-binding globulin measurement111333945813339459Human

1 to 10 of 20 rows


1 to 18 of 18 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1253075_H GCST90104297 Sex hormone-binding globulin levels 4,522 African ancestry individuals, 196,901 European ancestry individuals ? NR 9E-17 16.046 rs1037169 8.323 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:35192695
GWAS1144203_H GCST006476 Neuroticism 449,484 European ancestry individuals T NR 6E-9 8.222 rs1037169 5.819 neuroticism measurement (EFO:0007660)
 PMID:29942085
GWAS1191861_H GCST90012111 Sex hormone-binding globulin levels 370,125 European ancestry individuals T 0.312911 2E-44 43.699 rs1037169 0.0138535 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1194636_H GCST90012109 Sex hormone-binding globulin levels 180,726 European ancestry men T 0.312793 4E-20 19.398 rs1037169 0.0115299 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1195332_H GCST90012110 Sex hormone-binding globulin levels adjusted for BMI 368,929 European ancestry individuals T 0.312911 1E-41 41 rs1037169 0.0117228 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1196621_H GCST90012108 Sex hormone-binding globulin levels adjusted for BMI 180,094 European ancestry men T 0.312793 4E-16 15.398 rs1037169 0.00989768 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1201837_H GCST90012106 Sex hormone-binding globulin levels adjusted for BMI 188,908 European ancestry women T 0.313024 1E-24 24 rs1037169 0.0129775 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1203718_H GCST90012107 Sex hormone-binding globulin levels 189,473 European ancestry women T 0.313024 5E-24 23.302 rs1037169 0.0152522 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1252049_H GCST90104277 Sex hormone-binding globulin levels in postmenopausal women 92,911 European ancestry individuals T 0.314969 2E-12 11.699 rs1037169 0.0351435 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:35192695
None Available GCST90104273 Sex hormone-binding globulin levels 196,901 European ancestry individuals T 0.314969 4E-16 15.398 rs1037169 0.0279985 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:35192695
GWAS1285556_H GCST90239822 Sex hormone-binding globulin levels 188,443 British ancestry women ? NR 2E-20 19.699 rs1037169 0.0305275 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:36653534
GWAS1285672_H GCST90239821 Sex hormone-binding globulin levels 163,363 British ancestry men ? NR 3E-15 14.523 rs1037169 0.0271555 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:36653534
GWAS1285883_H GCST90239823 Free androgen index 162,068 British ancestry men ? NR 1E-8 8 rs1037169 0.020866 free androgen index (EFO:0007005)
 PMID:36653534
GWAS1290886_H GCST90239824 Free androgen index 158,208 British ancestry women ? NR 2E-9 8.699 rs1037169 0.022387 free androgen index (EFO:0007005)
 PMID:36653534
GWAS1360274_H GCST90239664 Triglyceride levels 1,320,016 European ancestry individuals C 0.682622 3E-22 21.523 rs1037169 0.0180982 triglyceride measurement (EFO:0004530)
 PMID:34887591
GWAS1374921_H GCST90027092 Sex hormone-binding globulin levels 158,000 British ancestry women C 0.69 9E-11 10.046 rs1037169 0.97 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:34321204
None Available GCST90027091 Sex hormone-binding globulin levels 148,248 British ancestry men C 0.69 1E-8 8 rs1037169 0.49 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:34321204
GWAS1435578_H GCST90270117 Multi-trait sum score 161,906 European ancestry females ? NR 4E-8 7.398 rs1037169 N/A complex trait (EFO:0010578)
 PMID:37277458
1 to 18 of 18 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90104297 GWAS Catalog

Note Type Note Reference