GWAS1247948_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1247948_H (lifestyle measurement, depressive symptom measurement QTL GWAS1247948 (human)) Homo sapiens

Symbol: GWAS1247948_H
Name: lifestyle measurement, depressive symptom measurement QTL GWAS1247948 (human)
RGD ID: 597151874
Trait: lifestyle measurement, depressive symptom measurement
LOD Score: Not Available
P Value: 3.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381560,785,801 - 60,785,802RGD_MAPPER_PIPELINEGRCh38
GRCh371561,078,000 - 61,078,001RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1247948_HHumandepressive symptom measurement  IAGPrs77902591405850206 GWAS_CATALOGPMID:34877740
GWAS1247948_HHumanlifestyle measurement  IAGPrs77902591405850206 GWAS_CATALOGPMID:34877740

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1318175RORARAR related orphan receptor A156048828461229302Human


Peak: (rs77902591)
Human AssemblyChrPosition (strand)Source
GRCh381560,785,801 - 60,785,802RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597151874GWAS1247948_Hlifestyle measurement, depressive symptom measurement QTL GWAS1247948 (human)3e-09lifestyle measurement, depressive symptom measurement156078580160785802Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1247948_H GCST90101754 Depression severity x hours spent using computers interaction 488,377 British ancestry individuals ? NR 3E-9 8.523 rs77902591 0.495225 lifestyle measurement (EFO:0010724)
depressive symptom measurement (EFO:0007006)
 PMID:34877740
Database
Acc Id
Source(s)
GWAS Catalog GCST90101754 GWAS Catalog

Note Type Note Reference