GWAS1246563_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1246563_H (triglycerides:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1246563 (human)) Homo sapiens

Symbol: GWAS1246563_H
Name: triglycerides:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1246563 (human)
RGD ID: 597150489
Trait: very low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratio
Measurement Type: blood C-reactive protein level   (CMO:0003160)    
blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 2.0E-20
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381544,550,012 - 44,550,013RGD_MAPPER_PIPELINEGRCh38
GRCh371544,842,210 - 44,842,211RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1246563_HHumanblood C-reactive protein level  IAGPrs151291132405850206 GWAS_CATALOGPMID:33462484
GWAS1246563_HHumanblood high density lipoprotein cholesterol level  IAGPrs151291132405850206 GWAS_CATALOGPMID:35213538


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1317118EIF3Jeukaryotic translation initiation factor 3 subunit J154453714744562803Human


Peak: (rs151291132)
Human AssemblyChrPosition (strand)Source
GRCh381544,550,012 - 44,550,013RGD_MAPPER_PIPELINE


1 to 10 of 46 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597152279GWAS1248353_Htriglyceride measurement, intermediate density lipoprotein measurement QTL GWAS1248353 (human)4e-22triglyceride measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)154455001244550013Human
597259869GWAS1355943_Htriglyceride measurement, phospholipid measurement QTL GWAS1355943 (human)6e-20triglyceride measurement, phospholipid measurementblood triglyceride level (CMO:0000118)154455001244550013Human
597246367GWAS1342441_HIGF-1 measurement QTL GWAS1342441 (human)1e-53IGF-1 measurementblood insulin-like growth factor 1 level (CMO:0001297)154455001244550013Human
597156126GWAS1252200_Hcholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1252200 (human)2e-17cholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154455001244550013Human
597262866GWAS1358940_Htriglycerides:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1358940 (human)3e-18triglycerides:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154455001244550013Human
597155738GWAS1251812_Hfree cholesterol:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS1251812 (human)2e-18free cholesterol:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)154455001244550013Human
597244759GWAS1340833_Hsex hormone-binding globulin measurement QTL GWAS1340833 (human)7e-32sex hormone-binding globulin measurement154455001244550013Human
597152281GWAS1248355_Hcholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1248355 (human)1e-20cholesterol:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)154455001244550013Human
597150489GWAS1246563_Htriglycerides:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1246563 (human)2e-20C-reactive protein measurementblood C-reactive protein level (CMO:0003160)154455001244550013Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human

1 to 10 of 46 rows


1 to 20 of 83 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1246563_H GCST90092903 Triglycerides to total lipids ratio in medium HDL 115,082 European ancestry individuals A 0.974731 2E-20 19.699 rs151291132 0.119196 triglycerides:total lipids ratio (EFO:0020947)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1717385_H GCST90019493 Serum albumin levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals G NR 2E-40 39.699 rs151291132 0.1112 serum albumin amount (OBA:2050068)
 PMID:33462484
GWAS1245877_H GCST90092893 Cholesterol to total lipids ratio in medium HDL 115,082 European ancestry individuals A 0.974731 1E-22 22 rs151291132 0.125583 cholesterol:total lipids ratio (EFO:0020943)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1245905_H GCST90092866 Triglyceride levels in large LDL 115,082 European ancestry individuals A 0.974731 6E-19 18.222 rs151291132 0.116867 triglyceride measurement (EFO:0004530)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1247362_H GCST90092895 Cholesteryl esters to total lipids ratio in medium HDL 115,082 European ancestry individuals A 0.974731 5E-22 21.302 rs151291132 0.125378 cholesteryl esters:total lipids ratio (EFO:0020944)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1247705_H GCST90092901 Phospholipids to total lipids ratio in medium HDL 115,082 European ancestry individuals A 0.974731 9E-22 21.046 rs151291132 0.122571 phospholipids:total lipids ratio (EFO:0020946)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1248068_H GCST90092902 Triglyceride levels in medium HDL 115,082 European ancestry individuals A 0.974731 4E-18 17.398 rs151291132 0.114568 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1248353_H GCST90092841 Triglyceride levels in IDL 115,082 European ancestry individuals A 0.974731 4E-22 21.398 rs151291132 0.126679 triglyceride measurement (EFO:0004530)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1248355_H GCST90092845 Cholesterol to total lipids ratio in large HDL 115,082 European ancestry individuals A 0.974731 1E-20 20 rs151291132 0.118167 cholesterol:total lipids ratio (EFO:0020943)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1248919_H GCST90092890 Triglyceride levels in LDL 115,082 European ancestry individuals A 0.974731 9E-20 19.046 rs151291132 0.119679 triglyceride measurement (EFO:0004530)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1249720_H GCST90092829 Triglyceride levels in HDL 115,082 European ancestry individuals A 0.974731 6E-18 17.222 rs151291132 0.113495 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1249743_H GCST90092844 Cholesterol levels in large HDL 115,082 European ancestry individuals A 0.974731 2E-10 9.699 rs151291132 0.0757154 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1250236_H GCST90092847 Cholesteryl esters to total lipids ratio in large HDL 115,082 European ancestry individuals A 0.974731 4E-20 19.398 rs151291132 0.11764 cholesteryl esters:total lipids ratio (EFO:0020944)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1681287_H GCST90092853 Phospholipids to total lipids ratio in large HDL 115,082 European ancestry individuals A 0.974731 2E-14 13.699 rs151291132 0.0991375 phospholipids:total lipids ratio (EFO:0020946)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1251541_H GCST90092846 Cholesteryl ester levels in large HDL 115,082 European ancestry individuals A 0.974731 3E-11 10.523 rs151291132 0.0792315 cholesteryl ester measurement (EFO:0010351)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1251812_H GCST90092836 Free cholesterol to total lipids ratio in IDL 115,082 European ancestry individuals A 0.974731 2E-18 17.699 rs151291132 0.117185 free cholesterol:total lipids ratio (EFO:0020945)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1251903_H GCST90092855 Triglycerides to total lipids ratio in large HDL 115,082 European ancestry individuals A 0.974731 7E-17 16.155 rs151291132 0.105877 triglycerides:total lipids ratio (EFO:0020947)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1251962_H GCST90092851 Concentration of large HDL particles 115,082 European ancestry individuals A 0.974731 2E-8 7.699 rs151291132 0.0665681 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1252155_H GCST90092909 Free cholesterol to total lipids ratio in medium LDL 115,082 European ancestry individuals A 0.974731 2E-30 29.699 rs151291132 0.146993 low density lipoprotein cholesterol measurement (EFO:0004611)
free cholesterol:total lipids ratio (EFO:0020945)
 PMID:35213538
GWAS1252200_H GCST90092947 Cholesteryl esters to total lipids ratio in small HDL 115,082 European ancestry individuals A 0.974731 2E-17 16.699 rs151291132 0.111509 cholesteryl esters:total lipids ratio (EFO:0020944)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
1 to 20 of 83 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90019499 GWAS Catalog
  GCST90092903 GWAS Catalog
  GCST90092919 GWAS Catalog

Note Type Note Reference