GWAS1246254_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1246254_H (body mass index QTL GWAS1246254 (human)) Homo sapiens

Symbol: GWAS1246254_H
Name: body mass index QTL GWAS1246254 (human)
RGD ID: 597150180
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 3.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381547,445,866 - 47,445,867RGD_MAPPER_PIPELINEGRCh38
GRCh371547,738,063 - 47,738,064RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1246254_HHumanbody mass index (BMI)  IAGPrs1559677405850206 GWAS_CATALOGPMID:36376304

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1246254_HHumanbody mass index  IAGPrs1559677405850206 GWAS_CATALOGPMID:36376304

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1605040SEMA6Dsemaphorin 6D154718408947774228Human


Peak: (rs1559677)
Human AssemblyChrPosition (strand)Source
GRCh381547,445,866 - 47,445,867RGD_MAPPER_PIPELINE


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597177291GWAS1273365_Hbody mass index QTL GWAS1273365 (human)2e-12body mass indexbody mass index (BMI) (CMO:0000105)154744586647445867Human
597150180GWAS1246254_Hbody mass index QTL GWAS1246254 (human)3e-12body mass indexbody mass index (BMI) (CMO:0000105)154744586647445867Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597075550GWAS1171624_Hbody mass index QTL GWAS1171624 (human)3e-08body mass indexbody mass index (BMI) (CMO:0000105)154744586647445867Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
596961759GWAS1081278_Hmetabolic syndrome QTL GWAS1081278 (human)3e-10metabolic syndrome154744586647445867Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597059787GWAS1155861_Hmetabolic syndrome QTL GWAS1155861 (human)3e-10metabolic syndrome154744586647445867Human

1 to 10 of 10 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1246254_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals A NR 3E-12 11.523 rs1559677 0.01145 body mass index (EFO:0004340)
 PMID:36376304
GWAS1155861_H GCST90444487 Metabolic syndrome 1,384,348 European ancestry individuals ? NR 3E-10 9.523 rs1559677 0.00811158 metabolic syndrome (EFO:0000195)
 PMID:39349817
GWAS1171624_H GCST004904 Body mass index up to 72,390 Japanese ancestry women, up to 85,894 Japanese ancestry men G 0.36 3E-8 7.523 rs1559677 0.013 body mass index (EFO:0004340)
 PMID:28892062
GWAS1273365_H GCST90255621 Body mass index 1,122,049 European ancestry individuals G NR 2E-12 11.699 rs1559677 0.0105 body mass index (EFO:0004340)
 PMID:36581621
Database
Acc Id
Source(s)
GWAS Catalog GCST90179150 GWAS Catalog

Note Type Note Reference