GWAS1244239_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1244239_H (prostate carcinoma QTL GWAS1244239 (human)) Homo sapiens

Symbol: GWAS1244239_H
Name: prostate carcinoma QTL GWAS1244239 (human)
RGD ID: 597148165
Trait: prostate carcinoma
LOD Score: Not Available
P Value: 3E-97
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381252,918,828 - 52,918,829RGD_MAPPER_PIPELINEGRCh38
GRCh371253,312,612 - 53,312,613RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1244239_HHumanprostate carcinoma  IAGPrs73110464405850206 GWAS_CATALOGPMID:37945903

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1244239_HHumanProstate cancer  IAGPrs73110464405850206 GWAS_CATALOGPMID:37945903
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1244239_HHumanprostate carcinoma  IAGPrs73110464405850206 GWAS_CATALOGPMID:37945903

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
735536KRT8keratin 8125289719152949860Human
155767420LOC127824240H3K4me1 hESC enhancer GRCh37_chr12:53312325-53312824125291854152919040Human


Peak: (rs73110464)
Human AssemblyChrPosition (strand)Source
GRCh381252,918,828 - 52,918,829RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597146903GWAS1242977_Hprostate carcinoma QTL GWAS1242977 (human)3e-18prostate carcinoma125291882852918829Human
407369573GWAS1018549_Hlung carcinoma, estrogen-receptor negative breast cancer, ovarian endometrioid carcinoma, colorectal cancer, prostate carcinoma, ovarian serous carcinoma, breast carcinoma, ovarian carcinoma, lung adenocarcinoma, squamous cell lung carcinoma QTL GWAS1018549 (human)2e-15mammary gland integrity trait (VT:0010552)125291882852918829Human
597148165GWAS1244239_Hprostate carcinoma QTL GWAS1244239 (human)3e-97prostate carcinoma125291882852918829Human
597162741GWAS1258815_Hprostate carcinoma QTL GWAS1258815 (human)1e-17prostate carcinoma125291882852918829Human
597148097GWAS1244171_Hprostate carcinoma QTL GWAS1244171 (human)8e-115prostate carcinoma125291882852918829Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1244239_H GCST90274714 Prostate cancer 122,188 European ancestry cases, 604,640 European ancestry controls T 0.125 3E-97 96.523 rs73110464 1.19 prostate carcinoma (EFO:0001663)
 PMID:37945903
GWAS1242977_H GCST90274715 Prostate cancer 19,391 African American or Afro-Caribbean cases, 61,608 African American or Afro-Caribbean controls T 0.149 3E-18 17.523 rs73110464 1.17 prostate carcinoma (EFO:0001663)
 PMID:37945903
GWAS1244171_H GCST90274713 Prostate cancer 122,188 European ancestry cases, 604,640 European ancestry controls, 19,391 African American or Afro-Caribbean cases, 61,608 African American or Afro-Caribbean controls, 10,809 East Asian ancestry cases, 95,790 East Asian ancestry controls, 3,931 Hispanic or Latin American cases, 26,405 Hispanic or Latin American controls T NR 8E-115 114.097 rs73110464 1.18 prostate carcinoma (EFO:0001663)
 PMID:37945903
GWAS1258815_H GCST90018905 Prostate cancer 11,599 European ancestry cases, 199,628 European ancestry controls, 5,672 East Asian ancestry cases, 84,660 East Asian ancestry controls T NR 1E-17 17 rs73110464 0.187 prostate carcinoma (EFO:0001663)
 PMID:34594039
GWAS1018549_H GCST003588 Cancer (pleiotropy) 5,020 European ancestry lung cancer cases, 3,718 European ancestry lung adenocarcinoma cases, 3,422 European ancestry lung squamous cell carcinoma cases, 15,414 European ancestry colorectal cancer cases, 10,809 European ancestry breast cancer cases, 4,939 European ancestry estrogen receptor negative breast cancer cases, 1,098 European ancestry ovarian cancer cases, 2,556 European ancestry serous ovarian cancer cases, 715 European ancestry ovarian endometrioid carcinoma cases, 9,710 European ancestry prostate cancer cases, 4,450 European ancestry aggressive prostate cancer cases, 61,820 European ancestry controls T NR 2E-15 14.699 rs73110464 N/A lung carcinoma (EFO:0001071)
estrogen-receptor negative breast cancer (EFO:1000650)
ovarian endometrioid carcinoma (EFO:1001515)
prostate carcinoma (EFO:0001663)
More... 		PMID:27197191
Database
Acc Id
Source(s)
GWAS Catalog GCST90274714 GWAS Catalog

Note Type Note Reference