GWAS1243440_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1243440_H (prostate carcinoma QTL GWAS1243440 (human)) Homo sapiens

Symbol: GWAS1243440_H
Name: prostate carcinoma QTL GWAS1243440 (human)
RGD ID: 597147366
Trait: prostate carcinoma
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38X11,443,954 - 11,443,955RGD_MAPPER_PIPELINEGRCh38
GRCh37X11,462,074 - 11,462,075RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1243440_HHumanprostate carcinoma  IAGPrs61018477405850206 GWAS_CATALOGPMID:37945903

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1243440_HHumanProstate cancer  IAGPrs61018477405850206 GWAS_CATALOGPMID:37945903
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1243440_HHumanprostate carcinoma  IAGPrs61018477405850206 GWAS_CATALOGPMID:37945903

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1349829ARHGAP6Rho GTPase activating protein 6X1113754411665920Human


Peak: (rs61018477)
Human AssemblyChrPosition (strand)Source
GRCh38X11,443,954 - 11,443,955RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597147366GWAS1243440_Hprostate carcinoma QTL GWAS1243440 (human)3e-08prostate carcinomaX1144395411443955Human
597150360GWAS1246434_Hprostate carcinoma QTL GWAS1246434 (human)1e-09prostate carcinomaX1144395411443955Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1243440_H GCST90274714 Prostate cancer 122,188 European ancestry cases, 604,640 European ancestry controls C 0.11 3E-8 7.523 rs61018477 1.05 prostate carcinoma (EFO:0001663)
 PMID:37945903
GWAS1246434_H GCST90274713 Prostate cancer 122,188 European ancestry cases, 604,640 European ancestry controls, 19,391 African American or Afro-Caribbean cases, 61,608 African American or Afro-Caribbean controls, 10,809 East Asian ancestry cases, 95,790 East Asian ancestry controls, 3,931 Hispanic or Latin American cases, 26,405 Hispanic or Latin American controls C NR 1E-9 9 rs61018477 1.04 prostate carcinoma (EFO:0001663)
 PMID:37945903
Database
Acc Id
Source(s)
GWAS Catalog GCST90274714 GWAS Catalog

Note Type Note Reference