GWAS1243346_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1243346_H (COVID-19 QTL GWAS1243346 (human)) Homo sapiens

Symbol: GWAS1243346_H
Name: COVID-19 QTL GWAS1243346 (human)
RGD ID: 597147272
Trait: COVID-19
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3818,960,846 - 8,960,847RGD_MAPPER_PIPELINEGRCh38
GRCh3719,020,905 - 9,020,906RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1243346_HHumanCOVID-19  IAGPrs1832262405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:36662838


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1323700CA6carbonic anhydrase 6189458688975092Human


Peak: (rs1832262)
Human AssemblyChrPosition (strand)Source
GRCh3818,960,846 - 8,960,847RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597147272GWAS1243346_HCOVID-19 QTL GWAS1243346 (human)3e-10COVID-19189608468960847Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1243346_H GCST90255358 Resistance to COVID-19 infection (Exposed negative vs positive) 306 resistant cases, up to 770 benign, mild or severe controls ? NR 3E-10 9.523 rs1832262 N/A PMID:36662838
Database
Acc Id
Source(s)
GWAS Catalog GCST90255358 GWAS Catalog

Note Type Note Reference