GWAS1243298_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1243298_H (nephrotic syndrome QTL GWAS1243298 (human)) Homo sapiens

Symbol: GWAS1243298_H
Name: nephrotic syndrome QTL GWAS1243298 (human)
RGD ID: 597147224
Trait: nephrotic syndrome
LOD Score: Not Available
P Value: 3.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381610,998,462 - 10,998,463RGD_MAPPER_PIPELINEGRCh38
GRCh371611,092,319 - 11,092,320RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1243298_HHumannephrotic syndrome  IAGPrs8062322405850206 GWAS_CATALOGPMID:37120605

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1243298_HHumanNephrotic syndrome  IAGPrs8062322405850206 GWAS_CATALOGPMID:37120605
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1243298_HHumannephrotic syndrome  IAGPrs8062322405850206 GWAS_CATALOGPMID:37120605

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604037CLEC16AC-type lectin domain containing 16A161094456411182186Human


Peak: (rs8062322)
Human AssemblyChrPosition (strand)Source
GRCh381610,998,462 - 10,998,463RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597148528GWAS1244602_Hnephrotic syndrome QTL GWAS1244602 (human)5e-09nephrotic syndrome161099846210998463Human
597147224GWAS1243298_Hnephrotic syndrome QTL GWAS1243298 (human)3e-11nephrotic syndrome161099846210998463Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1243298_H GCST90258619 Pediatric steroid sensitive nephrotic syndrome 674 European ancestry cases, 6,817 European ancestry controls, 109 African ancestry cases, 7,514 African ancestry controls, 1,311 East Asian ancestry cases, 7,780 East Asian ancestry controls, 193 South Asian ancestry cases, 436 South Asian ancestry controls, 55 Maghrebian ancestry cases, 228 Maghrebian ancestry controls, 98 Other admixed ancestry ancestry cases, 13,248 Other admixed ancestry ancestry controls A NR 3E-11 10.523 rs8062322 0.75 nephrotic syndrome (EFO:0004255)
 PMID:37120605
GWAS1244602_H GCST90269967 Pediatric steroid sensitive nephrotic syndrome 1,311 East Asian ancestry cases, 7,780 East Asian ancestry controls A NR 5E-9 8.302 rs8062322 0.68 nephrotic syndrome (EFO:0004255)
 PMID:37120605
Database
Acc Id
Source(s)
GWAS Catalog GCST90258619 GWAS Catalog

Note Type Note Reference