GWAS1242727_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1242727_H (prostate carcinoma QTL GWAS1242727 (human)) Homo sapiens

Symbol: GWAS1242727_H
Name: prostate carcinoma QTL GWAS1242727 (human)
RGD ID: 597146653
Trait: prostate carcinoma
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38115,859,140 - 15,859,141RGD_MAPPER_PIPELINEGRCh38
GRCh37116,185,635 - 16,185,642RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1242727_HHumanprostate carcinoma  IAGPrs34623941405850206 GWAS_CATALOGPMID:37945903

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1242727_HHumanProstate cancer  IAGPrs34623941405850206 GWAS_CATALOGPMID:37945903
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1242727_HHumanprostate carcinoma  IAGPrs34623941405850206 GWAS_CATALOGPMID:37945903

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350979SPENspen family transcriptional repressor11584770715940456Human


Peak: (rs34623941)
Human AssemblyChrPosition (strand)Source
GRCh38115,859,140 - 15,859,141RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597150839GWAS1246913_Hprostate carcinoma QTL GWAS1246913 (human)0.0000004prostate carcinoma11585914015859141Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597146653GWAS1242727_Hprostate carcinoma QTL GWAS1242727 (human)1e-09prostate carcinoma11585914015859141Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1242727_H GCST90274713 Prostate cancer 122,188 European ancestry cases, 604,640 European ancestry controls, 19,391 African American or Afro-Caribbean cases, 61,608 African American or Afro-Caribbean controls, 10,809 East Asian ancestry cases, 95,790 East Asian ancestry controls, 3,931 Hispanic or Latin American cases, 26,405 Hispanic or Latin American controls GTT NR 1E-9 9 rs34623941 1.04 prostate carcinoma (EFO:0001663)
 PMID:37945903
GWAS1246913_H GCST90274714 Prostate cancer 122,188 European ancestry cases, 604,640 European ancestry controls GTT 0.654 4E-7 6.398 rs34623941 1.03 prostate carcinoma (EFO:0001663)
 PMID:37945903
Database
Acc Id
Source(s)
GWAS Catalog GCST90274713 GWAS Catalog

Note Type Note Reference