GWAS1238185_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1238185_H (high density lipoprotein cholesterol measurement QTL GWAS1238185 (human)) Homo sapiens

Symbol: GWAS1238185_H
Name: high density lipoprotein cholesterol measurement QTL GWAS1238185 (human)
RGD ID: 597142111
Trait: high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38819,720,961 - 19,720,962RGD_MAPPER_PIPELINEGRCh38
GRCh37819,578,472 - 19,578,473RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1238185_HHumanblood high density lipoprotein cholesterol level  IAGPrs73202517405850206 GWAS_CATALOGPMID:36376304

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1238185_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs73202517405850206 GWAS_CATALOGPMID:36376304

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1601858CSGALNACT1chondroitin sulfate N-acetylgalactosaminyltransferase 181940416119757908Human


Peak: (rs73202517)
Human AssemblyChrPosition (strand)Source
GRCh38819,720,961 - 19,720,962RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human
597142111GWAS1238185_Hhigh density lipoprotein cholesterol measurement QTL GWAS1238185 (human)4e-08high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81972096119720962Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1238185_H GCST90179147 High-density lipoprotein levels (MTAG) 361,194 European ancestry individuals A NR 4E-8 7.398 rs73202517 0.033857 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36376304
Database
Acc Id
Source(s)
GWAS Catalog GCST90179147 GWAS Catalog

Note Type Note Reference