GWAS1237075_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1237075_H (X-17676 measurement QTL GWAS1237075 (human)) Homo sapiens

Symbol: GWAS1237075_H
Name: X-17676 measurement QTL GWAS1237075 (human)
RGD ID: 597141001
Trait: X-17676 measurement
LOD Score: Not Available
P Value: 3.0E-28
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38118,859,871 - 18,859,872RGD_MAPPER_PIPELINEGRCh38
GRCh37119,186,365 - 19,186,366RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1237075_HHumanX-17676 measurement  IAGPrs76018454405850206 GWAS_CATALOGPMID:35050183

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs76018454)
Human AssemblyChrPosition (strand)Source
GRCh38118,859,871 - 18,859,872RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597140278GWAS1236352_HS-1-pyrroline-5-carboxylate measurement QTL GWAS1236352 (human)3e-15S-1-pyrroline-5-carboxylate measurement11885987118859872Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597141001GWAS1237075_HX-17676 measurement QTL GWAS1237075 (human)3e-28X-17676 measurement11885987118859872Human
597315621GWAS1411695_HX-17676 measurement QTL GWAS1411695 (human)2e-61X-17676 measurement11885987118859872Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1237075_H GCST90103287 X-17676 levels 8,809 European ancestry individuals A NR 3E-28 27.523 rs76018454 0.466 X-17676 measurement (EFO:0800785)
 PMID:35050183
GWAS1236352_H GCST90103170 S-1-pyrroline-5-carboxylate levels 8,809 European ancestry individuals A NR 3E-15 14.523 rs76018454 0.335 S-1-pyrroline-5-carboxylate measurement (EFO:0800136)
 PMID:35050183
GWAS1411695_H GCST90245640 X-17676 levels 14,296 European ancestry individuals A 0.0364 2E-61 60.699 rs76018454 0.47347918 X-17676 measurement (EFO:0800785)
 PMID:36357675
Database
Acc Id
Source(s)
GWAS Catalog GCST90103287 GWAS Catalog

Note Type Note Reference