GWAS1236345_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1236345_H (QT interval QTL GWAS1236345 (human)) Homo sapiens

Symbol: GWAS1236345_H
Name: QT interval QTL GWAS1236345 (human)
RGD ID: 597140271
Trait: QT interval
Measurement Type: QT interval   (CMO:0000235)    
LOD Score: Not Available
P Value: 1.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38110,720,670 - 10,720,671RGD_MAPPER_PIPELINEGRCh38
GRCh37110,780,727 - 10,780,728RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1236345_HHumanQT interval  IAGPrs706007405850206 GWAS_CATALOGPMID:36271874

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1236345_HHumanQT interval  IAGPrs706007405850206 GWAS_CATALOGPMID:36271874

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1606535CASZ1castor zinc finger 111063660410796646Human


Peak: (rs706007)
Human AssemblyChrPosition (strand)Source
GRCh38110,720,670 - 10,720,671RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597279041GWAS1375115_HQT interval QTL GWAS1375115 (human)2e-12QT intervalQT interval (CMO:0000235)11072067010720671Human
597140271GWAS1236345_HQT interval QTL GWAS1236345 (human)1e-10QT intervalQT interval (CMO:0000235)11072067010720671Human
597461975GWAS1558049_Hdiastolic blood pressure QTL GWAS1558049 (human)5e-09diastolic blood pressurediastolic blood pressure (CMO:0000005)11072067010720671Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1236345_H GCST90165291 QT interval 86,165 European ancestry individuals, 13,975 Hispanic or Latin American individuals, 5,034 East Asian ancestry individuals, 8,457 African American individuals, 310 South Asian ancestry individuals, 1,631 Asian ancestry individuals, 1,370 Native Hawaiian ancestry individuals, 226 Native American ancestry individuals, 364 individuals A 0.115 1E-10 10 rs706007 0.96 QT interval (EFO:0004682)
 PMID:36271874
GWAS1375115_H GCST90179153 QT interval 252,730 European ancestry, African ancestry, Hispanic or Latin American, South East Asian ancestry, South Asian ancestry individuals A 0.8518 2E-12 11.699 rs706007 0.0339 QT interval (EFO:0004682)
 PMID:36050321
GWAS1558049_H GCST90449057 Diastolic blood pressure (MTAG) at least 757,601 European ancestry individuals (MTAG boosted by 455,258 Alzheimer's disease samples) G NR 5E-9 8.302 rs706007 0.01852017 diastolic blood pressure (EFO:0006336)
 PMID:39537608
Database
Acc Id
Source(s)
GWAS Catalog GCST90165291 GWAS Catalog

Note Type Note Reference