GWAS1217996_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1217996_H (SAPHO syndrome QTL GWAS1217996 (human)) Homo sapiens

Symbol: GWAS1217996_H
Name: SAPHO syndrome QTL GWAS1217996 (human)
RGD ID: 597121922
Trait: SAPHO syndrome
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38114,436,734 - 14,436,735RGD_MAPPER_PIPELINEGRCh38
GRCh37114,763,230 - 14,763,231RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1217996_HHumanSAPHO syndrome  IAGPrs10927436405850206 GWAS_CATALOGPMID:33816493

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1217996_HHumanSAPHO syndrome  IAGPrs10927436405850206 GWAS_CATALOGPMID:33816493

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604041KAZNkazrin, periplakin interacting protein11389282415118043Human


Peak: (rs10927436)
Human AssemblyChrPosition (strand)Source
GRCh38114,436,734 - 14,436,735RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597121922GWAS1217996_HSAPHO syndrome QTL GWAS1217996 (human)1e-08SAPHO syndrome11443673414436735Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1217996_H GCST012256 SAPHO syndrome 49 Chinese ancestry cases, 121 Chinese ancestry controls ? NR 1E-8 8 rs10927436 0.1324 SAPHO syndrome (EFO:1001164)
 PMID:33816493
Database
Acc Id
Source(s)
GWAS Catalog GCST012256 GWAS Catalog

Note Type Note Reference