GWAS1210310_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1210310_H (bitter non-alcoholic beverage consumption measurement QTL GWAS1210310 (human)) Homo sapiens

Symbol: GWAS1210310_H
Name: bitter non-alcoholic beverage consumption measurement QTL GWAS1210310 (human)
RGD ID: 597114236
Trait: bitter non-alcoholic beverage consumption measurement
Measurement Type: drink intake measurement   (CMO:0000771)    
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38497,584,198 - 97,584,199RGD_MAPPER_PIPELINEGRCh38
GRCh37498,505,349 - 98,505,350RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1210310_HHumandrink intake measurement  IAGPrs28766878405850206 GWAS_CATALOGPMID:31046077

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1210310_HHumanbitter non-alcoholic beverage consumption measurement  IAGPrs28766878405850206 GWAS_CATALOGPMID:31046077

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602169STPG2sperm tail PG-rich repeat containing 249744124998143476Human


Peak: (rs28766878)
Human AssemblyChrPosition (strand)Source
GRCh38497,584,198 - 97,584,199RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597091981GWAS1188055_HFEV/FVC ratio, response to bronchodilator QTL GWAS1188055 (human)0.000003FEV/FVC ratio, response to bronchodilatorforced expiratory volume to forced vital capacity ratio (CMO:0000241)49758419897584199Human
597114236GWAS1210310_Hbitter non-alcoholic beverage consumption measurement QTL GWAS1210310 (human)0.000004bitter non-alcoholic beverage consumption measurementdrink intake measurement (CMO:0000771)49758419897584199Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1210310_H GCST008524 Bitter non-alcoholic beverage consumption 85,852 European ancestry individuals T 0.4925 0.000004 5.398 rs28766878 0.0075 bitter non-alcoholic beverage consumption measurement (EFO:0010093)
 PMID:31046077
GWAS1188055_H GCST003264 Post bronchodilator FEV1/FVC ratio 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals C 0.688 0.000003 5.523 rs28766878 0.017 FEV/FVC ratio (EFO:0004713)
response to bronchodilator (GO:0097366)
 PMID:26634245
Database
Acc Id
Source(s)
GWAS Catalog GCST008524 GWAS Catalog

Note Type Note Reference