GWAS1204695_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1204695_H (spine bone size QTL GWAS1204695 (human)) Homo sapiens

Symbol: GWAS1204695_H
Name: spine bone size QTL GWAS1204695 (human)
RGD ID: 597108621
Trait: spine bone size
Measurement Type: vertebra morphological measurement   (CMO:0001679)    
LOD Score: Not Available
P Value: 6.0E-24
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,187,397 - 22,187,398RGD_MAPPER_PIPELINEGRCh38
GRCh37122,513,890 - 22,513,891RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1204695_HHumanvertebra morphological measurement  IAGPrs10917168405850206 GWAS_CATALOGPMID:31053729

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1204695_HHumanspine bone size  IAGPrs10917168405850206 GWAS_CATALOGPMID:31053729

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs10917168)
Human AssemblyChrPosition (strand)Source
GRCh38122,187,397 - 22,187,398RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597108621GWAS1204695_Hspine bone size QTL GWAS1204695 (human)6e-24spine bone sizevertebra morphological measurement (CMO:0001679)12218739722187398Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1204695_H GCST008282 Spine bone size 29,059 European ancestry individuals T 0.284 6E-24 23.222 rs10917168 0.074 spine bone size (EFO:0004508)
 PMID:31053729
Database
Acc Id
Source(s)
GWAS Catalog GCST008282 GWAS Catalog

Note Type Note Reference