GWAS1203256_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1203256_H (reticulocyte measurement QTL GWAS1203256 (human)) Homo sapiens

Symbol: GWAS1203256_H
Name: reticulocyte measurement QTL GWAS1203256 (human)
RGD ID: 597107182
Trait: reticulocyte morphology trait   (VT:0002424)    
Measurement Type: red blood cell measurement   (CMO:0001356)    
LOD Score: Not Available
P Value: 3.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,355,339 - 22,355,340RGD_MAPPER_PIPELINEGRCh38
GRCh37122,681,832 - 22,681,833RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1203256_HHumanred blood cell measurement  IAGPrs34818954405850206 GWAS_CATALOGPMID:32888494

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1203256_HHumanreticulocyte morphology trait  IAGPrs34818954405850206 GWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1203256_HHumanreticulocyte measurement  IAGPrs34818954405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs34818954)
Human AssemblyChrPosition (strand)Source
GRCh38122,355,339 - 22,355,340RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597106352GWAS1202426_Hreticulocyte count QTL GWAS1202426 (human)2e-10reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)12235533922355340Human
597107182GWAS1203256_Hreticulocyte measurement QTL GWAS1203256 (human)3e-14reticulocyte morphology trait (VT:0002424)red blood cell measurement (CMO:0001356)12235533922355340Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1203256_H GCST90002406 Reticulocyte fraction of red cells 408,112 British individuals C 0.214644 3E-14 13.523 rs34818954 0.021072034 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS1202426_H GCST90002405 Reticulocyte count 408,112 British individuals C 0.214648 2E-10 9.699 rs34818954 0.017551403 reticulocyte count (EFO:0007986)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST90002406 GWAS Catalog

Note Type Note Reference