GWAS1203158_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1203158_H (testosterone measurement QTL GWAS1203158 (human)) Homo sapiens

Symbol: GWAS1203158_H
Name: testosterone measurement QTL GWAS1203158 (human)
RGD ID: 597107084
Trait: testosterone measurement
Measurement Type: serum testosterone level   (CMO:0000568)    
LOD Score: Not Available
P Value: 4.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381557,008,754 - 57,008,755RGD_MAPPER_PIPELINEGRCh38
GRCh371557,300,952 - 57,300,953RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1203158_HHumanserum testosterone level  IAGPrs7496293405850206 GWAS_CATALOGPMID:32042192

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1203158_HHumantestosterone measurement  IAGPrs7496293405850206 GWAS_CATALOGPMID:32042192

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731955TCF12transcription factor 12155691809057291310Human


Peak: (rs7496293)
Human AssemblyChrPosition (strand)Source
GRCh381557,008,754 - 57,008,755RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597107084GWAS1203158_Htestosterone measurement QTL GWAS1203158 (human)4e-14testosterone measurementserum testosterone level (CMO:0000568)155700875457008755Human
597107564GWAS1203638_Htestosterone measurement QTL GWAS1203638 (human)4e-09testosterone measurementserum testosterone level (CMO:0000568)155700875457008755Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1203158_H GCST90012103 Bioavailable testosterone levels 178,782 European ancestry men T 0.562524 4E-14 13.398 rs7496293 0.0233129 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS1203638_H GCST90012104 Bioavailable testosterone levels 382,988 European ancestry individuals T 0.563651 4E-9 8.398 rs7496293 0.0121045 testosterone measurement (EFO:0004908)
 PMID:32042192
Database
Acc Id
Source(s)
GWAS Catalog GCST90012103 GWAS Catalog

Note Type Note Reference