GWAS1201948_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1201948_H (sex hormone-binding globulin measurement QTL GWAS1201948 (human)) Homo sapiens

Symbol: GWAS1201948_H
Name: sex hormone-binding globulin measurement QTL GWAS1201948 (human)
RGD ID: 597105874
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 4.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381553,455,031 - 53,455,032RGD_MAPPER_PIPELINEGRCh38
GRCh371553,747,228 - 53,747,229RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1201948_HHumansex hormone-binding globulin measurement  IAGPrs528350911405850206 GWAS_CATALOGPMID:32042192

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38612523LOC105370826uncharacterized LOC105370826155344579553552999Human


Peak: (rs528350911)
Human AssemblyChrPosition (strand)Source
GRCh381553,455,031 - 53,455,032RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597099541GWAS1195615_Hsex hormone-binding globulin measurement QTL GWAS1195615 (human)2e-22sex hormone-binding globulin measurement155345503153455032Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597100562GWAS1196636_Hsex hormone-binding globulin measurement QTL GWAS1196636 (human)1e-08sex hormone-binding globulin measurement155345503153455032Human
597105874GWAS1201948_Hsex hormone-binding globulin measurement QTL GWAS1201948 (human)4e-13sex hormone-binding globulin measurement155345503153455032Human
597100927GWAS1197001_Hsex hormone-binding globulin measurement QTL GWAS1197001 (human)5e-10sex hormone-binding globulin measurement155345503153455032Human
597096362GWAS1192436_Hsex hormone-binding globulin measurement QTL GWAS1192436 (human)6e-19sex hormone-binding globulin measurement155345503153455032Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597035896GWAS1131970_Htype 2 diabetes mellitus QTL GWAS1131970 (human)2e-08type 2 diabetes mellitus155345503153455032Human
597096521GWAS1192595_Hsex hormone-binding globulin measurement QTL GWAS1192595 (human)8e-11sex hormone-binding globulin measurement155345503153455032Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1201948_H GCST90012106 Sex hormone-binding globulin levels adjusted for BMI 188,908 European ancestry women C 0.993629 4E-13 12.398 rs528350911 0.057296 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1131970_H GCST009379 Type 2 diabetes 74,124 European ancestry cases, 824,006 European ancestry controls G 0.0068 2E-8 7.699 rs528350911 1.27 PMID:30297969
GWAS1192436_H GCST90012111 Sex hormone-binding globulin levels 370,125 European ancestry individuals C 0.993634 6E-19 18.222 rs528350911 0.0535565 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1192595_H GCST90012107 Sex hormone-binding globulin levels 189,473 European ancestry women C 0.993629 8E-11 10.097 rs528350911 0.0583329 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1195615_H GCST90012110 Sex hormone-binding globulin levels adjusted for BMI 368,929 European ancestry individuals C 0.993634 2E-22 21.699 rs528350911 0.0534402 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1196636_H GCST90012109 Sex hormone-binding globulin levels 180,726 European ancestry men C 0.99364 1E-8 8 rs528350911 0.0421259 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1197001_H GCST90012108 Sex hormone-binding globulin levels adjusted for BMI 180,094 European ancestry men C 0.99364 5E-10 9.302 rs528350911 0.0429262 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
Database
Acc Id
Source(s)
GWAS Catalog GCST90012106 GWAS Catalog

Note Type Note Reference