GWAS1199974_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1199974_H (alopecia QTL GWAS1199974 (human)) Homo sapiens

Symbol: GWAS1199974_H
Name: alopecia QTL GWAS1199974 (human)
RGD ID: 597103900
Trait: alopecia
LOD Score: Not Available
P Value: 2.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38124,991,734 - 24,991,735RGD_MAPPER_PIPELINEGRCh38
GRCh37125,318,225 - 25,318,226RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1199974_HHumanalopecia  IAGPrs186127900405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:28196072


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs186127900)
Human AssemblyChrPosition (strand)Source
GRCh38124,991,734 - 24,991,735RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597103900GWAS1199974_Halopecia QTL GWAS1199974 (human)2e-11alopecia12499173424991735Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1199974_H GCST006661 Male-pattern baldness 52,874 British ancestry males T NR 2E-11 10.699 rs186127900 0.180334 PMID:28196072
Database
Acc Id
Source(s)
GWAS Catalog GCST006661 GWAS Catalog

Note Type Note Reference