GWAS1193769_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1193769_H (sex hormone-binding globulin measurement QTL GWAS1193769 (human)) Homo sapiens

Symbol: GWAS1193769_H
Name: sex hormone-binding globulin measurement QTL GWAS1193769 (human)
RGD ID: 597097695
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 4.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382046,928,426 - 46,928,427RGD_MAPPER_PIPELINEGRCh38
GRCh372045,557,065 - 45,557,066RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1193769_HHumansex hormone-binding globulin measurement  IAGPrs1412957405850206 GWAS_CATALOGPMID:32042192

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350703EYA2EYA transcriptional coactivator and phosphatase 2204689484347188844Human


Peak: (rs1412957)
Human AssemblyChrPosition (strand)Source
GRCh382046,928,426 - 46,928,427RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
597341212GWAS1437286_Hserum alanine aminotransferase measurement QTL GWAS1437286 (human)4e-11serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)204692842646928427Human
597255550GWAS1351624_Hserum alanine aminotransferase measurement QTL GWAS1351624 (human)2e-10serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)204692842646928427Human
597097695GWAS1193769_Hsex hormone-binding globulin measurement QTL GWAS1193769 (human)4e-10sex hormone-binding globulin measurement204692842646928427Human
597100349GWAS1196423_Hsex hormone-binding globulin measurement QTL GWAS1196423 (human)4e-16sex hormone-binding globulin measurement204692842646928427Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1193769_H GCST90012111 Sex hormone-binding globulin levels 370,125 European ancestry individuals A 0.573839 4E-10 9.398 rs1412957 0.00573496 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1196423_H GCST90012110 Sex hormone-binding globulin levels adjusted for BMI 368,929 European ancestry individuals A 0.573839 4E-16 15.398 rs1412957 0.00662364 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS1351624_H GCST90013405 Liver enzyme levels (alanine transaminase) 437,267 European ancestry individuals A 0.57275 2E-10 9.699 rs1412957 0.00249693 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:33972514
GWAS1437286_H GCST90428729 Alanine aminotransferase levels 1,010,710 European ancestry individuals G NR 4E-11 10.398 rs1412957 0.0026 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:38632349
Database
Acc Id
Source(s)
GWAS Catalog GCST90012111 GWAS Catalog

Note Type Note Reference