GWAS1193101_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1193101_H (homocysteine measurement QTL GWAS1193101 (human)) Homo sapiens

Symbol: GWAS1193101_H
Name: homocysteine measurement QTL GWAS1193101 (human)
RGD ID: 597097027
Trait: homocysteine measurement
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38112,010,235 - 12,010,236RGD_MAPPER_PIPELINEGRCh38
GRCh37112,070,292 - 12,070,293RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1193101_HHumanhomocysteine measurement  IAGPrs730123405850206 GWAS_CATALOGPMID:30339177

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
732569MFN2mitofusin 211198044412013508Human


Peak: (rs730123)
Human AssemblyChrPosition (strand)Source
GRCh38112,010,235 - 12,010,236RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597097027GWAS1193101_Hhomocysteine measurement QTL GWAS1193101 (human)7e-09homocysteine measurement11201023512010236Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1193101_H GCST007578 Plasma homocysteine levels 2,232 Irish ancestry individuals ? NR 7E-9 8.155 rs730123 0.01915 homocysteine measurement (EFO:0004578)
 PMID:30339177
Database
Acc Id
Source(s)
GWAS Catalog GCST007578 GWAS Catalog

Note Type Note Reference