GWAS1192645_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1192645_H (major depressive disorder QTL GWAS1192645 (human)) Homo sapiens

Symbol: GWAS1192645_H
Name: major depressive disorder QTL GWAS1192645 (human)
RGD ID: 597096571
Trait: major depressive disorder
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38117,795,514 - 17,795,515RGD_MAPPER_PIPELINEGRCh38
GRCh37118,122,009 - 18,122,010RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1192645_HHumanmajor depressive disorder  IAGPrs4141983405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:33479212

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1192645_HHumanDepression  IAGPrs4141983405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:33479212

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602092ACTL8actin like 811775533317827063Human


Peak: (rs4141983)
Human AssemblyChrPosition (strand)Source
GRCh38117,795,514 - 17,795,515RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597096571GWAS1192645_Hmajor depressive disorder QTL GWAS1192645 (human)1e-08major depressive disorder11779551417795515Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1192645_H GCST012090 Major depressive disorder (MTAG) at least 170,756 European ancestry cases, at least 329,443 European ancestry controls T 0.674 1E-8 8 rs4141983 0.0253398 PMID:33479212
Database
Acc Id
Source(s)
GWAS Catalog GCST012090 GWAS Catalog

Note Type Note Reference