GWAS1186252_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1186252_H (monocyte percentage of leukocytes QTL GWAS1186252 (human)) Homo sapiens

Symbol: GWAS1186252_H
Name: monocyte percentage of leukocytes QTL GWAS1186252 (human)
RGD ID: 597090178
Trait: monocyte quantity   (VT:0000223)    
Measurement Type: blood monocyte count to total leukocyte count ratio   (CMO:0000374)    
LOD Score: Not Available
P Value: 5.0E-31
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38690,225,664 - 90,225,665RGD_MAPPER_PIPELINEGRCh38
GRCh37690,935,383 - 90,935,384RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1186252_HHumanblood monocyte count to total leukocyte count ratio  IAGPrs60066732405850206 GWAS_CATALOGPMID:32888494

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1186252_HHumanmonocyte quantity  IAGPrs60066732405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1186252_HHumanmonocyte percentage of leukocytes  IAGPrs60066732405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1319503BACH2BTB domain and CNC homolog 268992652890296843Human


Peak: (rs60066732)
Human AssemblyChrPosition (strand)Source
GRCh38690,225,664 - 90,225,665RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597090178GWAS1186252_Hmonocyte percentage of leukocytes QTL GWAS1186252 (human)5e-31monocyte quantity (VT:0000223)blood monocyte count to total leukocyte count ratio (CMO:0000374)69022566490225665Human
1298426BFD3_HBody fluid distribution QTL 3 (human)2.790.01Body fluid distributionimpedance ratio684873647110873647Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1186252_H GCST90002394 Monocyte percentage of white cells 408,112 British individuals G 0.362057 5E-31 30.302 rs60066732 0.026725467 monocyte percentage of leukocytes (EFO:0007989)
 PMID:32888494
GWAS1724420_H GCST007070 White blood cell count approximately 444,000 European ancestry individuals ? NR 9E-24 23.046 rs60066732 N/A leukocyte quantity (OBA:VT0000217)
 PMID:30595370
Database
Acc Id
Source(s)
GWAS Catalog GCST90002394 GWAS Catalog

Note Type Note Reference