GWAS1184920_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1184920_H (Ischemic stroke, type 2 diabetes mellitus QTL GWAS1184920 (human)) Homo sapiens

Symbol: GWAS1184920_H
Name: Ischemic stroke, type 2 diabetes mellitus QTL GWAS1184920 (human)
RGD ID: 597088846
Trait: Ischemic stroke, type 2 diabetes mellitus
LOD Score: Not Available
P Value: 8.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38115,102,737 - 15,102,738RGD_MAPPER_PIPELINEGRCh38
GRCh37115,429,233 - 15,429,234RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1184920_HHumantype 2 diabetes mellitus  IAGPrs491203405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:32541925

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1184920_HHumanIschemic stroke  IAGPrs491203405850206 GWAS_CATALOGPMID:32541925

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604041KAZNkazrin, periplakin interacting protein11389282415118043Human


Peak: (rs491203)
Human AssemblyChrPosition (strand)Source
GRCh38115,102,737 - 15,102,738RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597088846GWAS1184920_HIschemic stroke, type 2 diabetes mellitus QTL GWAS1184920 (human)8e-09Ischemic stroke, type 2 diabetes mellitus11510273715102738Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1184920_H GCST010550 Acute ischemic stroke x type 2 diabetes interaction 11,796 European ancestry cases, 178,481 European ancestry controls A 0.057 8E-9 8.097 rs491203 N/A Ischemic stroke (HP:0002140)
 PMID:32541925
Database
Acc Id
Source(s)
GWAS Catalog GCST010550 GWAS Catalog

Note Type Note Reference