GWAS1182929_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1182929_H (PR interval QTL GWAS1182929 (human)) Homo sapiens

Symbol: GWAS1182929_H
Name: PR interval QTL GWAS1182929 (human)
RGD ID: 597086855
Trait: PR interval
Measurement Type: PR interval   (CMO:0000233)    
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381832,449,178 - 32,449,179RGD_MAPPER_PIPELINEGRCh38
GRCh371830,029,141 - 30,029,142RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1182929_HHumanPR interval  IAGPrs982521405850206 GWAS_CATALOGPMID:32439900

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1182929_HHumanPR interval  IAGPrs982521405850206 GWAS_CATALOGPMID:32439900

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1342843GAREM1GRB2 associated regulator of MAPK1 subtype 1183226352232470882Human


Peak: (rs982521)
Human AssemblyChrPosition (strand)Source
GRCh381832,449,178 - 32,449,179RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597086855GWAS1182929_HPR interval QTL GWAS1182929 (human)0.000002PR intervalPR interval (CMO:0000233)183244917832449179Human
597079173GWAS1175247_HPR interval QTL GWAS1175247 (human)2e-18PR intervalPR interval (CMO:0000233)183244917832449179Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1182929_H GCST010321 PR interval 271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals C 0.2261 0.000002 5.699 rs982521 1.4982 PR interval (EFO:0004462)
 PMID:32439900
GWAS1175247_H GCST010321 PR interval 271,570 European ancestry individuals, 8,173 African American individuals, 12,823 Hispanic/Latino individuals C 0.18 2E-18 17.699 rs982521 0.75 PR interval (EFO:0004462)
 PMID:32439900
Database
Acc Id
Source(s)
GWAS Catalog GCST010321 GWAS Catalog

Note Type Note Reference