GWAS1181775_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1181775_H (type 2 diabetes mellitus QTL GWAS1181775 (human)) Homo sapiens

Symbol: GWAS1181775_H
Name: type 2 diabetes mellitus QTL GWAS1181775 (human)
RGD ID: 597085701
Trait: type 2 diabetes mellitus
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381424,409,164 - 24,409,165RGD_MAPPER_PIPELINEGRCh38
GRCh371424,878,370 - 24,878,371RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1181775_HHumantype 2 diabetes mellitus  IAGPrs12437434405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:32499647


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1345252NYNRINNYN domain and retroviral integrase containing142439900324419283Human


Peak: (rs12437434)
Human AssemblyChrPosition (strand)Source
GRCh381424,409,164 - 24,409,165RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597085701GWAS1181775_Htype 2 diabetes mellitus QTL GWAS1181775 (human)1e-09type 2 diabetes mellitus142440916424409165Human
597603269GWAS1660129_Htype 2 diabetes mellitus QTL GWAS1660129 (human)2e-12type 2 diabetes mellitus142440916424409165Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1181775_H GCST010118 Type 2 diabetes 77,418 East Asian cases, 356,122 East Asian controls C 0.713 1E-9 9 rs12437434 1.05 PMID:32499647
GWAS1660129_H GCST90492734 Type 2 diabetes 50,251 African American cases, 103,909 African American controls, 88,109 East Asian ancestry cases, 339,395 East Asian ancestry controls, 242,283 European ancestry cases, 1,569,734 European ancestry controls, 29,375 Hispanic cases, 59,368 Hispanic controls, 1,602 South African ancestry cases, 976 South African ancestry controls, 16,832 South Asian ancestry cases, 33,767 South Asian ancestry controls C 0.92758 2E-12 11.699 rs12437434 N/A PMID:38374256
Database
Acc Id
Source(s)
GWAS Catalog GCST010118 GWAS Catalog

Note Type Note Reference