GWAS1179438_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1179438_H (lymphocyte count QTL GWAS1179438 (human)) Homo sapiens

Symbol: GWAS1179438_H
Name: lymphocyte count QTL GWAS1179438 (human)
RGD ID: 597083364
Trait: lymphocyte count
Measurement Type: blood lymphocyte count   (CMO:0000031)    
LOD Score: Not Available
P Value: 3.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381550,718,074 - 50,718,075RGD_MAPPER_PIPELINEGRCh38
GRCh371551,010,271 - 51,010,272RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1179438_HHumanblood lymphocyte count  IAGPrs60695341405850206 GWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1179438_HHumanlymphocyte count  IAGPrs60695341405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602994SPPL2Asignal peptide peptidase like 2A155070226650765706Human


Peak: (rs60695341)
Human AssemblyChrPosition (strand)Source
GRCh381550,718,074 - 50,718,075RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597168249GWAS1264323_Hcalcium measurement QTL GWAS1264323 (human)5e-11calcium measurementblood calcium level (CMO:0000502)155071807450718075Human
597083364GWAS1179438_Hlymphocyte count QTL GWAS1179438 (human)3e-11lymphocyte countblood lymphocyte count (CMO:0000031)155071807450718075Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597082227GWAS1178301_Hmonocyte count QTL GWAS1178301 (human)6e-12monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)155071807450718075Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1179438_H GCST90002388 Lymphocyte count 408,112 British individuals T 0.197399 3E-11 10.523 rs60695341 0.018420639 lymphocyte count (EFO:0004587)
 PMID:32888494
GWAS1706023_H GCST90002407 White blood cell count 408,112 British individuals T 0.197422 5E-25 24.302 rs60695341 0.028703822 leukocyte quantity (OBA:VT0000217)
 PMID:32888494
GWAS1178301_H GCST90002344 Monocyte count 639,696 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals T 0.216088 6E-12 11.222 rs60695341 N/A monocyte count (EFO:0005091)
 PMID:32888493
GWAS1737645_H GCST90002374 White blood cell count 562,243 European ancestry individuals T 0.197348 3E-38 37.523 rs60695341 0.029901 myeloid leukocyte count (OBA:2045223)
 PMID:32888493
GWAS1264323_H GCST90018731 Calcium levels 83,980 East Asian ancestry individuals T 0.36214 5E-11 10.302 rs60695341 0.0323613 calcium measurement (EFO:0004838)
 PMID:34594039
Database
Acc Id
Source(s)
GWAS Catalog GCST90002388 GWAS Catalog

Note Type Note Reference